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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5966-RA through 18771 annotations produced 1 hits



(CG5966):

Annotation Number : CG5966
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029831
Gbrowse : chrX:5882844-5886677 (+) // 100.0 //
Probeset : 1627287_at
Accessions : protein= NP_572286;, nucleotide= NM_132058;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // infe
FlyMine data for FBgn0029831.
BDGP gene expression has embryonic in situ data for CG5966: 27 pix of staining in 9 body parts.
Homophila reports that CG5966 is a close match (1e-37) to human gene HDLCQ11;LIPD;LPL (NP_000228), a gene associated with Combined hyperlipidemia, familial, 144250 (3);Lipoprotein lipase deficiency, 238600 (3);[High density lipoprotein cholesterol level QTL 11] (3).
TRiP has 1 RNAi stocks for FBgn0029831 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029831 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 10 of 4 0.10Down
Head211 ± 554 of 4 1.40None
Eye221 ± 384 of 4 1.44None
Thoracicoabdominal ganglion9 ± 20 of 4 0.10Down
Salivary gland5 ± 40 of 4 0.04Down
Crop124 ± 84 of 4 0.80None
Midgut277 ± 134 of 4 1.80Up
Tubule11 ± 21 of 4 0.10Down
Hindgut34 ± 54 of 4 0.20Down
Heart577 ± 644 of 4 3.75Up
Fat body628 ± 1624 of 4 4.09Up
Ovary195 ± 44 of 4 1.30None
Testis85 ± 14 of 4 0.60None
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca563 ± 934 of 4 3.66Up
Mated spermatheca422 ± 384 of 4 2.75Up
Adult carcass281 ± 204 of 4 1.80Up
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland26 ± 31 of 4 0.17Down
Larval midgut100 ± 150 of 4 0.65None
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut8 ± 10 of 4 0.06Down
Larval fat body2146 ± 1024 of 413.90Up
Larval trachea12 ± 91 of 4 0.08Down
Larval carcass13 ± 41 of 4 0.09Down
S2 cells (growing)5 ± 00 of 4 0.03Down
Whole fly153 ± 224 of 4

Looking for CG5966-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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