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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5978-RA through 18771 annotations produced 1 hits



(CG5978):

Annotation Number : CG5978
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035916
Gbrowse : chr3L:8615130-8616990 (-) // 100.0 //
Probeset : 1640561_at
Accessions : protein= NP_648245;, nucleotide= NM_139988;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0035916.
VDRC has 3 RNAi stocks for FBgn0035916 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 24 of 4 1.00None
Head86 54 of 4 0.60Down
Eye112 24 of 4 0.78Down
Thoracicoabdominal ganglion105 24 of 4 0.70Down
Salivary gland115 74 of 4 0.80Down
Crop120 54 of 4 0.80Down
Midgut81 34 of 4 0.60Down
Tubule100 54 of 4 0.70Down
Hindgut69 34 of 4 0.50Down
Heart190 94 of 4 1.31Up
Fat body154 144 of 4 1.07None
Ovary288 54 of 4 2.00Up
Testis26 14 of 4 0.20Down
Male accessory glands139 44 of 4 1.00None
Virgin spermatheca132 44 of 4 0.92None
Mated spermatheca134 34 of 4 0.93None
Adult carcass105 34 of 4 0.70Down
Larval CNS167 94 of 4 1.16Up
Larval Salivary gland160 54 of 4 1.11None
Larval midgut154 164 of 4 1.06None
Larval tubule199 44 of 4 1.40Up
Larval hindgut119 84 of 4 0.83None
Larval fat body394 484 of 4 2.70Up
Larval trachea120 54 of 4 0.84Down
Larval carcass108 114 of 4 0.75Down
S2 cells (growing)173 44 of 4 1.20Up
Whole fly144 34 of 4

Looking for CG5978-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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