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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5987-RA through 18771 annotations produced 1 hits



(CG5987):

Annotation Number : CG5987
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039501
Gbrowse : chr3R:23073948-23076729 (-) // 100.0 //
Probeset : 1636489_at
Accessions : protein= NP_651549;, nucleotide= NM_143292;
Interpro : 0004835 // tubulin-tyrosine ligase activity // inferred from sequence or structural similarity /// 0004835 // tubulin-ty
FlyMine data for FBgn0039501.
BDGP gene expression has embryonic in situ data for CG5987: 10 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0039501 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 04 of 4 0.20Down
Head12 ± 13 of 4 0.20Down
Eye8 ± 04 of 4 0.11Down
Thoracicoabdominal ganglion16 ± 24 of 4 0.20Down
Salivary gland26 ± 13 of 4 0.34Down
Crop9 ± 13 of 4 0.10Down
Midgut11 ± 11 of 4 0.10Down
Tubule13 ± 03 of 4 0.20Down
Hindgut10 ± 13 of 4 0.10Down
Heart11 ± 13 of 4 0.15Down
Fat body17 ± 44 of 4 0.23Down
Ovary5 ± 02 of 4 0.10Down
Testis1006 ± 474 of 412.90Up
Male accessory glands9 ± 21 of 4 0.10Down
Virgin spermatheca18 ± 14 of 4 0.24Down
Mated spermatheca16 ± 24 of 4 0.22Down
Adult carcass18 ± 32 of 4 0.20Down
Larval CNS14 ± 24 of 4 0.19Down
Larval Salivary gland11 ± 13 of 4 0.15Down
Larval midgut15 ± 24 of 4 0.20Down
Larval tubule23 ± 14 of 4 0.30Down
Larval hindgut8 ± 04 of 4 0.11Down
Larval fat body129 ± 693 of 4 1.70None
Larval trachea14 ± 14 of 4 0.18Down
Larval carcass16 ± 14 of 4 0.22Down
S2 cells (growing)17 ± 24 of 4 0.23Down
Whole fly77 ± 74 of 4

Looking for CG5987-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime