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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5992-RA through 18771 annotations produced 1 hits



Adenosine deaminase-related growth factor A (Adgf-A):

Annotation Number : CG5992
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036752
Gbrowse : chr3L:17744830-17757253 (-) // 99.5 //
Probeset : 1624054_at
Accessions : protein= NP_524130; /// NP_996119;, nucleotide= NM_079406; /// NM_206397;
Pathway : 0005615 // extracellular space // inferred from electronic annotation /// 0005615 // extracellular space // non-traceabl
Interpro : 0004000 // adenosine deaminase activity // inferred from direct assay /// 0004000 // adenosine deaminase activity // inf
FlyMine data for FBgn0036752.
BDGP gene expression has embryonic in situ data for Adgf-A: 43 pix of staining in 18 body parts.
VDRC has 4 RNAi stocks for FBgn0036752 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 10 of 4 0.10Down
Head77 44 of 4 0.60Down
Eye4 12 of 4 0.03Down
Thoracicoabdominal ganglion5 10 of 4 0.00Down
Salivary gland10 20 of 4 0.08Down
Crop80 54 of 4 0.60Down
Midgut1158 194 of 4 8.90Up
Tubule38 94 of 4 0.30Down
Hindgut305 114 of 4 2.40Up
Heart198 134 of 4 1.53Up
Fat body21 41 of 4 0.17Down
Ovary76 24 of 4 0.60Down
Testis92 14 of 4 0.70Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca85 74 of 4 0.66Down
Mated spermatheca85 154 of 4 0.66None
Adult carcass37 23 of 4 0.30Down
Larval CNS122 154 of 4 0.94None
Larval Salivary gland27 24 of 4 0.21Down
Larval midgut850 294 of 4 6.56Up
Larval tubule209 74 of 4 1.60Up
Larval hindgut103 74 of 4 0.79None
Larval fat body56 54 of 4 0.40Down
Larval trachea20 34 of 4 0.16Down
Larval carcass43 04 of 4 0.33Down
S2 cells (growing)254 134 of 4 1.96Up
Whole fly129 114 of 4

Looking for CG5992-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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