FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG5993-RA through 18771 annotations produced 1 hits

chrX:18199376-18201858 (-) // 100.0 // (unpaired):

Annotation Number : CG5993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633968_at
Accessions : protein= , nucleotide= NP_001097015; /// NP_525095;
Pathway : "0001700 // embryonic development via the syncytial blastoderm // traceable author statement /// 0003383 // apical const
Interpro : establishment of X:A ratio // non-traceable author statement /// 0016476 // regulation of embryonic cell shape // infer
FlyMine data for full length.
BioGrid reports that CG5993 interacts with CG32346 CG1641 CG8068 CG1594 CG1594 CG1594 CG1594 CG1594 CG1594 CG1594 CG1594 CG4257 CG14226 CG14226 CG14226 CG10016 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.40	None
Head	2 ± 0	0 of 4	0.40	None
Eye	0 ± 0	0 of 4	0.11	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.40	None
Salivary gland	8 ± 3	0 of 4	1.61	None
Crop	2 ± 1	0 of 4	0.50	None
Midgut	1 ± 0	0 of 4	0.20	None
Tubule	2 ± 0	0 of 4	0.50	Down
Hindgut	0 ± 0	0 of 4	0.10	None
Heart	0 ± 0	0 of 4	0.08	Down
Fat body	4 ± 1	0 of 4	0.86	None
Ovary	2 ± 1	0 of 4	0.50	None
Testis	6 ± 1	1 of 4	1.20	None
Male accessory glands	2 ± 0	0 of 4	0.40	None
Virgin spermatheca	1 ± 0	0 of 4	0.18	None
Mated spermatheca	4 ± 1	0 of 4	0.77	None
Adult carcass	5 ± 3	0 of 4	0.90	None
Larval CNS	30 ± 1	4 of 4	5.52	Up
Larval Salivary gland	2 ± 1	0 of 4	0.50	None
Larval midgut	0 ± 0	0 of 4	0.15	None
Larval tubule	1 ± 0	0 of 4	0.20	None
Larval hindgut	2 ± 1	0 of 4	0.46	None
Larval fat body	1 ± 0	0 of 4	0.30	None
Larval trachea	1 ± 0	0 of 4	0.21	None
Larval carcass	7 ± 2	0 of 4	1.28	None
S2 cells (growing)	2 ± 1	0 of 4	0.41	None
Whole fly	5 ± 1	0 of 4

Looking for CG5993-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720