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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5993-RA through 18771 annotations produced 1 hits



chrX:18199376-18201858 (-) // 100.0 // (unpaired):

Annotation Number : CG5993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633968_at
Accessions : protein= , nucleotide= NP_001097015; /// NP_525095;
Pathway : "0001700 // embryonic development via the syncytial blastoderm // traceable author statement /// 0003383 // apical const
Interpro : establishment of X:A ratio // non-traceable author statement /// 0016476 // regulation of embryonic cell shape // infer
FlyMine data for full length.
BioGrid reports that CG5993 interacts with CG32346 CG1641 CG8068 CG1594 CG1594 CG1594 CG1594 CG1594 CG1594 CG1594 CG1594 CG4257 CG14226 CG14226 CG14226 CG10016 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.40None
Head2 00 of 4 0.40None
Eye0 00 of 4 0.11None
Thoracicoabdominal ganglion2 00 of 4 0.40None
Salivary gland8 30 of 4 1.61None
Crop2 10 of 4 0.50None
Midgut1 00 of 4 0.20None
Tubule2 00 of 4 0.50Down
Hindgut0 00 of 4 0.10None
Heart0 00 of 4 0.08Down
Fat body4 10 of 4 0.86None
Ovary2 10 of 4 0.50None
Testis6 11 of 4 1.20None
Male accessory glands2 00 of 4 0.40None
Virgin spermatheca1 00 of 4 0.18None
Mated spermatheca4 10 of 4 0.77None
Adult carcass5 30 of 4 0.90None
Larval CNS30 14 of 4 5.52Up
Larval Salivary gland2 10 of 4 0.50None
Larval midgut0 00 of 4 0.15None
Larval tubule1 00 of 4 0.20None
Larval hindgut2 10 of 4 0.46None
Larval fat body1 00 of 4 0.30None
Larval trachea1 00 of 4 0.21None
Larval carcass7 20 of 4 1.28None
S2 cells (growing)2 10 of 4 0.41None
Whole fly5 10 of 4

Looking for CG5993-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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