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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG5999-RA through 18771 annotations produced 1 hits



(CG5999):

Annotation Number : CG5999
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038083
Gbrowse : chr3R:8567749-8569344 (-) // 100.0 //
Probeset : 1638182_at
Accessions : protein= NP_650229;, nucleotide= NM_141972;
Interpro : "0015020 // glucuronosyltransferase activity // inferred from sequence or structural similarity /// 0015020 // glucurono
FlyMine data for FBgn0038083.
Homophila reports that CG5999 is a close match (4e-33) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 4 RNAi stocks for FBgn0038083 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.30Down
Head25 ± 104 of 4 1.40None
Eye7 ± 23 of 4 0.39None
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland11 ± 10 of 4 0.59None
Crop8 ± 00 of 4 0.40None
Midgut205 ± 174 of 410.80Up
Tubule31 ± 42 of 4 1.70Up
Hindgut72 ± 84 of 4 3.80Up
Heart22 ± 34 of 4 1.19None
Fat body91 ± 404 of 4 4.79Up
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca49 ± 24 of 4 2.59Up
Mated spermatheca23 ± 22 of 4 1.25None
Adult carcass16 ± 50 of 4 0.90None
Larval CNS1 ± 10 of 4 0.10Down
Larval Salivary gland2 ± 00 of 4 0.13Down
Larval midgut427 ± 634 of 422.50Up
Larval tubule2678 ± 1084 of 4141.00Up
Larval hindgut29 ± 53 of 4 1.57None
Larval fat body78 ± 341 of 4 4.10None
Larval trachea7 ± 21 of 4 0.41None
Larval carcass3 ± 10 of 4 0.16Down
S2 cells (growing)2 ± 10 of 4 0.14Down
Whole fly19 ± 43 of 4

Looking for CG5999-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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