Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6009-RA through 18771 annotations produced 1 hits



Pyrroline 5-carboyxlate reductase (P5cr):

Annotation Number : CG6009
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015781
Gbrowse : chr3R:14854658-14855902 (+) // 100.0 //
Probeset : 1638624_at
Accessions : protein= NP_524400;, nucleotide= NM_079676;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004735 // pyrroline-5-carboxylate reductase ac
FlyMine data for FBgn0015781.
BDGP gene expression has embryonic in situ data for P5cr: 12 pix of staining in 4 body parts.
BioGrid reports that CG6009 interacts with CG6009 .
VDRC has 4 RNAi stocks for FBgn0015781 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain265 ± 34 of 4 1.90Up
Head202 ± 104 of 4 1.40Up
Eye141 ± 94 of 4 1.00None
Thoracicoabdominal ganglion312 ± 104 of 4 2.20Up
Salivary gland1080 ± 294 of 4 7.65Up
Crop536 ± 174 of 4 3.80Up
Midgut293 ± 124 of 4 2.10Up
Tubule28 ± 12 of 4 0.20Down
Hindgut691 ± 174 of 4 4.90Up
Heart233 ± 144 of 4 1.65Up
Fat body285 ± 424 of 4 2.02Up
Ovary166 ± 24 of 4 1.20None
Testis62 ± 24 of 4 0.40Down
Male accessory glands140 ± 50 of 4 1.00None
Virgin spermatheca214 ± 44 of 4 1.52Up
Mated spermatheca173 ± 134 of 4 1.23None
Adult carcass181 ± 84 of 4 1.30Up
Larval CNS201 ± 154 of 4 1.43Up
Larval Salivary gland106 ± 74 of 4 0.76Down
Larval midgut97 ± 13 of 4 0.69Down
Larval tubule14 ± 20 of 4 0.10Down
Larval hindgut184 ± 144 of 4 1.31None
Larval fat body112 ± 64 of 4 0.80Down
Larval trachea148 ± 114 of 4 1.05None
Larval carcass107 ± 64 of 4 0.76Down
S2 cells (growing)116 ± 64 of 4 0.82None
Whole fly141 ± 84 of 4

Looking for CG6009-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime