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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6012-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2L:16860072-16861419 (-) // 100.0 //):

Annotation Number : CG6012
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1632808_at
Accessions : protein= EC:1.1.1.-, nucleotide=
Interpro : 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from
Homophila reports that CG6012 is a close match (8e-35) to human gene EDH17B3;HSD17B3 (NP_000188), a gene associated with Pseudohermaphroditism, male, with gynecomastia, 264300 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.90None
Head3 ± 20 of 4 0.60None
Eye2 ± 00 of 4 0.40None
Thoracicoabdominal ganglion14 ± 21 of 4 2.10None
Salivary gland9 ± 10 of 4 1.38None
Crop4 ± 20 of 4 0.60None
Midgut59 ± 64 of 4 8.80Up
Tubule6 ± 10 of 4 1.00None
Hindgut6 ± 10 of 4 0.90None
Heart7 ± 22 of 4 1.13None
Fat body19 ± 43 of 4 2.83Up
Ovary1 ± 00 of 4 0.20None
Testis6 ± 11 of 4 1.00None
Male accessory glands6 ± 20 of 4 1.00None
Virgin spermatheca10 ± 14 of 4 1.56None
Mated spermatheca12 ± 33 of 4 1.90None
Adult carcass20 ± 13 of 4 3.00Up
Larval CNS7 ± 23 of 4 1.11None
Larval Salivary gland12 ± 21 of 4 1.84None
Larval midgut50 ± 54 of 4 7.51Up
Larval tubule12 ± 33 of 4 1.90None
Larval hindgut18 ± 14 of 4 2.78Up
Larval fat body250 ± 594 of 436.90Up
Larval trachea74 ± 14 of 411.01Up
Larval carcass129 ± 204 of 419.09Up
S2 cells (growing)2 ± 00 of 4 0.30None
Whole fly6 ± 22 of 4

Looking for CG6012-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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