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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6015-RA through 18771 annotations produced 1 hits



(CG6015):

Annotation Number : CG6015
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038927
Gbrowse : chr3R:17857864-17860116 (-) // 100.0 //
Probeset : 1634334_at
Accessions : protein= NP_651005;, nucleotide= NM_142748;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity"
FlyMine data for FBgn0038927.
Homophila reports that CG6015 is a close match (4e-14) to human gene LIS1;PAFAH1B1 (NP_000421), a gene associated with Lissencephaly-1, 607432 (3);Subcortical laminar heterotopia (3).
TRiP has 1 RNAi stocks for FBgn0038927 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038927 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain151 ± 24 of 4 1.40Up
Head76 ± 44 of 4 0.70Down
Eye68 ± 44 of 4 0.62Down
Thoracicoabdominal ganglion117 ± 24 of 4 1.10None
Salivary gland111 ± 124 of 4 1.00None
Crop88 ± 34 of 4 0.80Down
Midgut102 ± 24 of 4 0.90None
Tubule76 ± 34 of 4 0.70Down
Hindgut91 ± 44 of 4 0.80Down
Heart54 ± 24 of 4 0.49Down
Fat body66 ± 34 of 4 0.60Down
Ovary157 ± 34 of 4 1.40Up
Testis111 ± 44 of 4 1.00None
Male accessory glands107 ± 24 of 4 1.00None
Virgin spermatheca67 ± 04 of 4 0.60Down
Mated spermatheca70 ± 54 of 4 0.63Down
Adult carcass70 ± 54 of 4 0.60Down
Larval CNS187 ± 54 of 4 1.69Up
Larval Salivary gland139 ± 64 of 4 1.26Up
Larval midgut84 ± 34 of 4 0.76Down
Larval tubule85 ± 44 of 4 0.80Down
Larval hindgut87 ± 24 of 4 0.79Down
Larval fat body85 ± 24 of 4 0.80Down
Larval trachea103 ± 154 of 4 0.94None
Larval carcass78 ± 34 of 4 0.71Down
S2 cells (growing)207 ± 84 of 4 1.87Up
Whole fly111 ± 64 of 4

Looking for CG6015-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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