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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6018-RA through 18771 annotations produced 1 hits



orphan alpha-esterase (CG6018):

Annotation Number : CG6018
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034736
Gbrowse : chr2R:18437622-18439478 (+) // 100.0 //
Probeset : 1628645_at
Accessions : protein= NP_611678;, nucleotide= NM_137834;
Interpro : 0004091 // carboxylesterase activity // inferred from sequence or structural similarity /// 0004091 // carboxylesterase
FlyMine data for FBgn0034736.
Homophila reports that CG6018 is a close match (5e-19) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
VDRC has 3 RNAi stocks for FBgn0034736 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 10 of 4 0.70None
Head14 ± 10 of 4 0.70None
Eye8 ± 10 of 4 0.40None
Thoracicoabdominal ganglion20 ± 03 of 4 0.90None
Salivary gland16 ± 31 of 4 0.74None
Crop49 ± 14 of 4 2.30Up
Midgut234 ± 124 of 410.70Up
Tubule48 ± 64 of 4 2.20Up
Hindgut70 ± 24 of 4 3.20Up
Heart16 ± 13 of 4 0.74None
Fat body12 ± 21 of 4 0.58None
Ovary1 ± 00 of 4 0.10Down
Testis9 ± 01 of 4 0.40None
Male accessory glands47 ± 34 of 4 2.20Up
Virgin spermatheca5 ± 20 of 4 0.24Down
Mated spermatheca2 ± 00 of 4 0.11Down
Adult carcass7 ± 30 of 4 0.40Down
Larval CNS18 ± 24 of 4 0.84None
Larval Salivary gland27 ± 31 of 4 1.24None
Larval midgut182 ± 74 of 4 8.36Up
Larval tubule170 ± 54 of 4 7.80Up
Larval hindgut153 ± 14 of 4 7.04Up
Larval fat body38 ± 33 of 4 1.80Up
Larval trachea18 ± 42 of 4 0.83None
Larval carcass22 ± 14 of 4 1.04None
S2 cells (growing)108 ± 44 of 4 4.97Up
Whole fly21 ± 43 of 4

Looking for CG6018-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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