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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6019-RA through 18771 annotations produced 1 hits



Nuclease-3 (mus308):

Annotation Number : CG6019
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002905
Gbrowse : chr3R:8531392-8537929 (-) // 100.0 //
Probeset : 1635214_at
Accessions : protein= NP_524333;, nucleotide= NM_079609;
Interpro : "0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elec
FlyMine data for FBgn0002905.
BDGP gene expression has embryonic in situ data for mus308: 11 pix of staining in 16 body parts.
VDRC has 3 RNAi stocks for FBgn0002905 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 24 of 4 0.40Down
Head8 10 of 4 0.20Down
Eye5 00 of 4 0.16Down
Thoracicoabdominal ganglion20 34 of 4 0.60Down
Salivary gland2 00 of 4 0.08Down
Crop11 20 of 4 0.30Down
Midgut10 10 of 4 0.30Down
Tubule8 00 of 4 0.20Down
Hindgut13 21 of 4 0.40Down
Heart11 13 of 4 0.34Down
Fat body16 30 of 4 0.47Down
Ovary76 34 of 4 2.20Up
Testis41 14 of 4 1.20Up
Male accessory glands29 13 of 4 0.90None
Virgin spermatheca18 20 of 4 0.53Down
Mated spermatheca11 10 of 4 0.32Down
Adult carcass14 30 of 4 0.40Down
Larval CNS37 14 of 4 1.09None
Larval Salivary gland10 20 of 4 0.30Down
Larval midgut16 10 of 4 0.48Down
Larval tubule6 30 of 4 0.20Down
Larval hindgut15 22 of 4 0.46Down
Larval fat body9 41 of 4 0.30Down
Larval trachea20 54 of 4 0.60Down
Larval carcass13 10 of 4 0.39Down
S2 cells (growing)52 14 of 4 1.53Up
Whole fly34 24 of 4

Looking for CG6019-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime