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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6022-RA through 18771 annotations produced 1 hits



CG6022 (Cchl):

Annotation Number : CG6022
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038925
Gbrowse : chr3R:17851686-17853198 (-) // 100.0 //
Probeset : 1637165_at
Accessions : protein= NP_651003;, nucleotide= NM_142746;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
Interpro : 0004408 // holocytochrome-c synthase activity // inferred from sequence or structural similarity /// 0004408 // holocyto
FlyMine data for FBgn0038925.
BDGP gene expression has embryonic in situ data for CG6022: 17 pix of staining in 9 body parts.
Homophila reports that CG6022 is a close match (4e-70) to human gene HCCS;MCOPS7 (NP_005324), a gene associated with Microphthalmia, syndromic 7, 309801 (3).
BioGrid reports that CG6022 interacts with CG9624 .
VDRC has 3 RNAi stocks for FBgn0038925 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain717 ± 314 of 4 1.30Up
Head535 ± 164 of 4 1.00None
Eye1210 ± 554 of 4 2.17Up
Thoracicoabdominal ganglion938 ± 174 of 4 1.70Up
Salivary gland425 ± 224 of 4 0.76Down
Crop586 ± 114 of 4 1.10None
Midgut249 ± 144 of 4 0.40Down
Tubule365 ± 204 of 4 0.70Down
Hindgut648 ± 174 of 4 1.20Up
Heart504 ± 344 of 4 0.90None
Fat body312 ± 454 of 4 0.56Down
Ovary664 ± 194 of 4 1.20Up
Testis872 ± 44 of 4 1.60Up
Male accessory glands493 ± 184 of 4 0.90Down
Virgin spermatheca225 ± 154 of 4 0.40Down
Mated spermatheca209 ± 84 of 4 0.38Down
Adult carcass871 ± 734 of 4 1.60Up
Larval CNS417 ± 354 of 4 0.75Down
Larval Salivary gland184 ± 34 of 4 0.33Down
Larval midgut195 ± 184 of 4 0.35Down
Larval tubule173 ± 124 of 4 0.30Down
Larval hindgut399 ± 334 of 4 0.71Down
Larval fat body215 ± 474 of 4 0.40Down
Larval trachea300 ± 264 of 4 0.54Down
Larval carcass461 ± 384 of 4 0.83None
S2 cells (growing)304 ± 94 of 4 0.55Down
Whole fly558 ± 134 of 4

Looking for CG6022-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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