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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6025-RA through 18771 annotations produced 1 hits



Arflike at 72A (Arf72A):

Annotation Number : CG6025
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000115
Gbrowse : chr3L:15976220-15977463 (+) // 100.0 //
Probeset : 1636130_at
Accessions : protein= NP_524098;, nucleotide= NM_079374;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable aut
FlyMine data for FBgn0000115.
Homophila reports that CG6025 is a close match (2e-18) to human gene CMRD;SAR1B;SARA2 (NP_057187), a gene associated with Anderson disease, 607689 (3);Chylomicron retention disease, 246700 (3).
BioGrid reports that CG6025 interacts with CG6756 CG8977 CG9031 .
TRiP has 1 RNAi stocks for FBgn0000115 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000115 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain202 24 of 4 0.80Down
Head231 44 of 4 0.90Down
Eye253 94 of 4 0.95None
Thoracicoabdominal ganglion218 34 of 4 0.80Down
Salivary gland1002 364 of 4 3.75Up
Crop402 214 of 4 1.50Up
Midgut344 104 of 4 1.30Up
Tubule542 224 of 4 2.00Up
Hindgut351 104 of 4 1.30Up
Heart261 84 of 4 0.98None
Fat body258 354 of 4 0.97None
Ovary432 104 of 4 1.60Up
Testis152 64 of 4 0.60Down
Male accessory glands984 184 of 4 3.70Up
Virgin spermatheca374 204 of 4 1.40Up
Mated spermatheca385 124 of 4 1.44Up
Adult carcass203 134 of 4 0.80Down
Larval CNS433 134 of 4 1.62Up
Larval Salivary gland1304 944 of 4 4.88Up
Larval midgut350 74 of 4 1.31Up
Larval tubule552 94 of 4 2.10Up
Larval hindgut359 44 of 4 1.35Up
Larval fat body486 244 of 4 1.80Up
Larval trachea477 464 of 4 1.79Up
Larval carcass319 104 of 4 1.19Up
S2 cells (growing)460 74 of 4 1.72Up
Whole fly267 104 of 4

Looking for CG6025-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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