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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6028-RA through 18771 annotations produced 1 hits



(CG6028):

Annotation Number : CG6028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038924
Gbrowse : chr3R:17849977-17851226 (-) // 100.0 //
Probeset : 1625465_a_at
Accessions : protein= NP_651002;, nucleotide= NM_142745;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0038924.
BDGP gene expression has embryonic in situ data for CG6028: 31 pix of staining in 15 body parts.
VDRC has 3 RNAi stocks for FBgn0038924 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain199 84 of 4 0.50Down
Head474 154 of 4 1.20None
Eye403 224 of 4 1.05None
Thoracicoabdominal ganglion212 74 of 4 0.60Down
Salivary gland307 54 of 4 0.80None
Crop808 254 of 4 2.10Up
Midgut1836 344 of 4 4.80Up
Tubule2394 354 of 4 6.20Up
Hindgut1015 264 of 4 2.60Up
Heart724 304 of 4 1.89Up
Fat body792 604 of 4 2.06Up
Ovary233 24 of 4 0.60Down
Testis47 14 of 4 0.10Down
Male accessory glands192 64 of 4 0.50Down
Virgin spermatheca1447 284 of 4 3.77Up
Mated spermatheca1085 1134 of 4 2.83Up
Adult carcass679 194 of 4 1.80Up
Larval CNS346 384 of 4 0.90None
Larval Salivary gland1100 624 of 4 2.87Up
Larval midgut772 464 of 4 2.01Up
Larval tubule3041 1204 of 4 7.90Up
Larval hindgut1323 114 of 4 3.45Up
Larval fat body713 924 of 4 1.90Up
Larval trachea903 294 of 4 2.35Up
Larval carcass939 804 of 4 2.45Up
S2 cells (growing)231 64 of 4 0.60Down
Whole fly383 414 of 4

Looking for CG6028-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime