FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6033-RE through 18771 annotations produced 1 hits

downstream of receptor kinase (drk):

Annotation Number : CG6033
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004638
Gbrowse : chr2R:9382726-9390342 (-) // 100.0 //
Probeset : 1625475_s_at
Accessions : protein= NP_476858; /// NP_725302; /// NP_725303; /// NP_725304; /// NP_725305; /// NP_725306;, nucleotide= NM_057510; /// NM_165994; /// NM_165995; /// NM_165996; /// NM_165997; /// NM_165998;
Pathway : embryo // traceable author statement /// 0045500 // sevenless signaling pathway // inferred from genetic interaction //
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0004638.
BDGP gene expression has embryonic in situ data for drk: 18 pix of staining in 15 body parts.
Homophila reports that CG6033 is a close match (2e-11) to human gene AGMX1;AT;BTK;IMD1;XLA (NP_000052), a gene associated with Agammaglobulinemia, type 1, X-linked (3);XLA and isolated growth hormone deficiency, 307200 (3).
BioGrid reports that CG6033 interacts with CG6667 CG7048 CG7524 CG3954 CG18085 CG18085 CG18085 CG18085 CG7524 CG11502 CG11502 CG11502 CG11502 CG1389 CG1389 CG7873 CG7873 CG5529 CG9695 CG9695 .
TRiP has 3 RNAi stocks for FBgn0004638 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004638 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	394 ± 3	4 of 4	2.80	Up
Head	260 ± 10	4 of 4	1.90	Up
Eye	160 ± 9	4 of 4	1.16	None
Thoracicoabdominal ganglion	362 ± 8	4 of 4	2.60	Up
Salivary gland	330 ± 14	4 of 4	2.39	Up
Crop	474 ± 13	4 of 4	3.40	Up
Midgut	126 ± 6	4 of 4	0.90	None
Tubule	178 ± 5	4 of 4	1.30	Up
Hindgut	273 ± 4	4 of 4	2.00	Up
Heart	247 ± 11	4 of 4	1.79	Up
Fat body	190 ± 31	4 of 4	1.38	None
Ovary	105 ± 4	4 of 4	0.80	None
Testis	69 ± 0	4 of 4	0.50	Down
Male accessory glands	460 ± 8	4 of 4	3.30	Up
Virgin spermatheca	581 ± 29	4 of 4	4.20	Up
Mated spermatheca	599 ± 33	4 of 4	4.33	Up
Adult carcass	149 ± 7	4 of 4	1.10	None
Larval CNS	753 ± 63	4 of 4	5.44	Up
Larval Salivary gland	349 ± 17	4 of 4	2.53	Up
Larval midgut	142 ± 4	4 of 4	1.03	None
Larval tubule	215 ± 10	4 of 4	1.60	Up
Larval hindgut	260 ± 3	4 of 4	1.88	Up
Larval fat body	625 ± 85	4 of 4	4.50	Up
Larval trachea	259 ± 21	4 of 4	1.88	Up
Larval carcass	229 ± 8	4 of 4	1.66	Up
S2 cells (growing)	194 ± 3	4 of 4	1.40	Up
Whole fly	138 ± 14	4 of 4

Looking for CG6033-RE. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720