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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG6036-RA through 18771 annotations produced 1 hits


(CG6036):

Annotation Number : CG6036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039421
Gbrowse : chr3R:22170052-22171187 (-) // 100.0 //
Probeset : 1640124_at
Accessions : protein= NP_651472;, nucleotide= NM_143215;
Pathway : 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred fr
FlyMine data for FBgn0039421.
VDRC has 2 RNAi stocks for FBgn0039421 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland8 ± 30 of 4 0.21Down
Crop5 ± 20 of 4 0.10Down
Midgut3 ± 20 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut5 ± 10 of 4 0.10Down
Heart2 ± 10 of 4 0.06Down
Fat body6 ± 40 of 4 0.15Down
Ovary1 ± 00 of 4 0.00Down
Testis626 ± 184 of 414.50Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca3 ± 00 of 4 0.09Down
Mated spermatheca2 ± 00 of 4 0.06Down
Adult carcass6 ± 20 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland6 ± 10 of 4 0.14Down
Larval midgut3 ± 10 of 4 0.09Down
Larval tubule2 ± 20 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.08Down
Larval fat body56 ± 304 of 4 1.30None
Larval trachea4 ± 41 of 4 0.10Down
Larval carcass2 ± 10 of 4 0.05Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly43 ± 24 of 4

Looking for CG6036-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime