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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6040-RA through 18771 annotations produced 1 hits



(CG6040):

Annotation Number : CG6040
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038679
Gbrowse : chr3R:14949721-14957661 (+) // 100.0 //
Probeset : 1640059_at
Accessions : protein= NP_650781;, nucleotide= NM_142524;
FlyMine data for FBgn0038679.
BDGP gene expression has embryonic in situ data for CG6040: 12 pix of staining in 9 body parts.
VDRC has 2 RNAi stocks for FBgn0038679 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 84 of 4 1.30Up
Head97 ± 84 of 4 1.90Up
Eye128 ± 44 of 4 2.47Up
Thoracicoabdominal ganglion103 ± 74 of 4 2.00Up
Salivary gland19 ± 31 of 4 0.38Down
Crop101 ± 54 of 4 1.90Up
Midgut22 ± 13 of 4 0.40Down
Tubule12 ± 11 of 4 0.20Down
Hindgut99 ± 24 of 4 1.90Up
Heart20 ± 04 of 4 0.39Down
Fat body24 ± 84 of 4 0.47Down
Ovary32 ± 14 of 4 0.60Down
Testis72 ± 54 of 4 1.40Up
Male accessory glands12 ± 00 of 4 0.20Down
Virgin spermatheca52 ± 34 of 4 1.01None
Mated spermatheca66 ± 54 of 4 1.27None
Adult carcass75 ± 64 of 4 1.40Up
Larval CNS28 ± 24 of 4 0.55Down
Larval Salivary gland42 ± 13 of 4 0.81None
Larval midgut18 ± 34 of 4 0.36Down
Larval tubule7 ± 11 of 4 0.10Down
Larval hindgut105 ± 34 of 4 2.02Up
Larval fat body15 ± 52 of 4 0.30Down
Larval trachea193 ± 114 of 4 3.71Up
Larval carcass287 ± 184 of 4 5.52Up
S2 cells (growing)42 ± 14 of 4 0.82None
Whole fly52 ± 44 of 4

Looking for CG6040-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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