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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6045-RA through 18771 annotations produced 1 hits



(CG6045):

Annotation Number : CG6045
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038349
Gbrowse : chr3R:11368473-11373457 (-) // 100.0 //
Probeset : 1630503_at
Accessions : protein= NP_650477;, nucleotide= NM_142220;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004854 // xanthine dehydrogenase activity // i
FlyMine data for FBgn0038349.
Homophila reports that CG6045 is a close match (3e-131) to human gene XDH (NP_000370), a gene associated with Xanthinuria, type I, 278300 (3).
VDRC has 4 RNAi stocks for FBgn0038349 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 ± 54 of 4 0.50Down
Head630 ± 104 of 4 2.00Up
Eye169 ± 114 of 4 0.54Down
Thoracicoabdominal ganglion197 ± 54 of 4 0.60Down
Salivary gland127 ± 44 of 4 0.41Down
Crop901 ± 114 of 4 2.90Up
Midgut914 ± 324 of 4 2.90Up
Tubule1358 ± 764 of 4 4.40Up
Hindgut681 ± 94 of 4 2.20Up
Heart374 ± 134 of 4 1.20Up
Fat body351 ± 494 of 4 1.13None
Ovary238 ± 74 of 4 0.80Down
Testis241 ± 94 of 4 0.80Down
Male accessory glands880 ± 164 of 4 2.80Up
Virgin spermatheca1041 ± 244 of 4 3.34Up
Mated spermatheca1039 ± 314 of 4 3.33Up
Adult carcass678 ± 224 of 4 2.20Up
Larval CNS136 ± 74 of 4 0.44Down
Larval Salivary gland105 ± 34 of 4 0.34Down
Larval midgut80 ± 84 of 4 0.26Down
Larval tubule1084 ± 324 of 4 3.50Up
Larval hindgut246 ± 114 of 4 0.79Down
Larval fat body202 ± 124 of 4 0.70Down
Larval trachea269 ± 104 of 4 0.87None
Larval carcass747 ± 464 of 4 2.39Up
S2 cells (growing)143 ± 64 of 4 0.46Down
Whole fly311 ± 154 of 4

Looking for CG6045-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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