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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6050-RA through 18771 annotations produced 1 hits



Elongation factor Tu mitochondrial (EfTuM):

Annotation Number : CG6050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024556
Gbrowse : chr2R:9395062-9396838 (+) // 100.0 //
Probeset : 1623588_at
Accessions : protein= NP_001163144; /// NP_524752;, nucleotide= NM_001169673; /// NM_080013;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence o
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003746 // translation elongation factor activi
FlyMine data for FBgn0024556.
Homophila reports that CG6050 is a close match (4e-142) to human gene COXPD4;EFTU;TUFM (NP_003312), a gene associated with Combined oxidative phosphorylation deficiency 4, 610678 (3).
TRiP has 1 RNAi stocks for FBgn0024556 available for purchase.
VDRC has 3 RNAi stocks for FBgn0024556 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain337 84 of 4 0.90None
Head262 194 of 4 0.70Down
Eye216 54 of 4 0.58Down
Thoracicoabdominal ganglion385 184 of 4 1.00None
Salivary gland345 244 of 4 0.93None
Crop306 114 of 4 0.80None
Midgut272 164 of 4 0.70Down
Tubule816 164 of 4 2.20Up
Hindgut475 74 of 4 1.30Up
Heart414 154 of 4 1.11None
Fat body353 444 of 4 0.95None
Ovary411 94 of 4 1.10None
Testis106 44 of 4 0.30Down
Male accessory glands330 144 of 4 0.90None
Virgin spermatheca374 334 of 4 1.01None
Mated spermatheca407 184 of 4 1.10None
Adult carcass443 54 of 4 1.20None
Larval CNS413 434 of 4 1.11None
Larval Salivary gland378 174 of 4 1.02None
Larval midgut236 134 of 4 0.64Down
Larval tubule146 94 of 4 0.40Down
Larval hindgut558 504 of 4 1.50Up
Larval fat body103 94 of 4 0.30Down
Larval trachea400 524 of 4 1.08None
Larval carcass359 404 of 4 0.97None
S2 cells (growing)482 84 of 4 1.30Up
Whole fly372 324 of 4

Looking for CG6050-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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