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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6051-RA through 18771 annotations produced 1 hits



(CG6051):

Annotation Number : CG6051
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3R:22950473-22954915 (-) // 100.0 //
Probeset : 1628488_at
Accessions : protein= NP_001097943;, nucleotide= NM_001104473;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
Homophila reports that CG6051 is a close match (6e-11) to human gene FGD4;FRABIN (NP_640334), a gene associated with Charcot-Marie-Tooth disease, type 4H, 609311 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain152 14 of 4 1.10None
Head122 94 of 4 0.90None
Eye78 24 of 4 0.58Down
Thoracicoabdominal ganglion116 24 of 4 0.90Down
Salivary gland304 154 of 4 2.23Up
Crop146 34 of 4 1.10None
Midgut212 34 of 4 1.60Up
Tubule294 224 of 4 2.20Up
Hindgut239 114 of 4 1.80Up
Heart102 114 of 4 0.75None
Fat body135 34 of 4 0.99None
Ovary268 54 of 4 2.00Up
Testis43 24 of 4 0.30Down
Male accessory glands265 84 of 4 1.90Up
Virgin spermatheca449 214 of 4 3.29Up
Mated spermatheca443 204 of 4 3.25Up
Adult carcass83 24 of 4 0.60Down
Larval CNS151 164 of 4 1.11None
Larval Salivary gland191 124 of 4 1.40Up
Larval midgut241 204 of 4 1.77Up
Larval tubule265 114 of 4 1.90Up
Larval hindgut413 214 of 4 3.03Up
Larval fat body26 44 of 4 0.20Down
Larval trachea92 64 of 4 0.68Down
Larval carcass190 684 of 4 1.40None
S2 cells (growing)86 34 of 4 0.63Down
Whole fly136 54 of 4

Looking for CG6051-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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