FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6052-RA through 18771 annotations produced 1 hits

(CG6052):

Annotation Number : CG6052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036747
Gbrowse : chr3L:17716817-17722224 (-) // 100.0 //
Probeset : 1641565_at
Accessions : protein= NP_649002;, nucleotide= NM_140745;
Pathway : 0043190 // ATP-binding cassette (ABC) transporter complex // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0036747.
Homophila reports that CG6052 is a close match (3e-11) to human gene ABCB7;ABC7;ASAT (NP_004290), a gene associated with Anemia, sideroblastic, with ataxia, 301310 (3).
VDRC has 3 RNAi stocks for FBgn0036747 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.50	None
Head	3 ± 1	0 of 4	1.00	None
Eye	0 ± 0	0 of 4	0.17	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.70	None
Salivary gland	5 ± 2	0 of 4	1.71	None
Crop	1 ± 1	0 of 4	0.50	None
Midgut	2 ± 1	0 of 4	0.60	None
Tubule	3 ± 0	0 of 4	1.00	None
Hindgut	3 ± 0	0 of 4	0.90	None
Heart	1 ± 0	0 of 4	0.47	None
Fat body	3 ± 2	0 of 4	0.88	None
Ovary	0 ± 0	0 of 4	0.20	None
Testis	23 ± 2	4 of 4	6.80	Up
Male accessory glands	1 ± 0	0 of 4	0.50	None
Virgin spermatheca	2 ± 0	0 of 4	0.63	None
Mated spermatheca	3 ± 1	0 of 4	0.92	None
Adult carcass	1 ± 1	0 of 4	0.60	None
Larval CNS	1 ± 1	1 of 4	0.48	None
Larval Salivary gland	2 ± 1	0 of 4	0.69	None
Larval midgut	4 ± 0	0 of 4	1.16	None
Larval tubule	2 ± 0	0 of 4	0.70	None
Larval hindgut	2 ± 0	0 of 4	0.57	None
Larval fat body	5 ± 2	0 of 4	1.50	None
Larval trachea	0 ± 0	0 of 4	0.27	None
Larval carcass	3 ± 0	0 of 4	1.12	None
S2 cells (growing)	0 ± 0	0 of 4	0.27	None
Whole fly	3 ± 1	0 of 4

Looking for CG6052-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720