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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6054-RA through 18771 annotations produced 1 hits



suppressor of fused (Su(fu)):

Annotation Number : CG6054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005355
Gbrowse : chr3R:8515588-8517434 (-) // 100.0 //
Probeset : 1638427_at
Accessions : protein= NP_536750;, nucleotide= NM_080502;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0035301 // Hedgehog signaling complex // inferred from physical i
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred
FlyMine data for FBgn0005355.
BDGP gene expression has embryonic in situ data for Su(fu): 4 pix of staining in 1 body parts.
Homophila reports that CG6054 is a close match (3e-74) to human gene SUFU;SUFUH;SUFUXL (NP_057253), a gene associated with Medulloblastoma, desmoplastic, 155255 (3).
BioGrid reports that CG6054 interacts with CG4379 CG4379 CG6551 CG6551 CG6551 CG6551 CG6551 CG6551 CG6551 CG6551 CG6551 CG6551 CG2621 CG2411 CG2411 CG2411 CG2411 CG2125 CG6551 EG2735 EG56469 CG2125 .
TRiP has 1 RNAi stocks for FBgn0005355 available for purchase.
VDRC has 1 RNAi stocks for FBgn0005355 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 34 of 4 0.60Down
Head63 34 of 4 0.50Down
Eye76 44 of 4 0.66Down
Thoracicoabdominal ganglion69 34 of 4 0.60Down
Salivary gland101 64 of 4 0.86None
Crop133 24 of 4 1.10Up
Midgut49 44 of 4 0.40Down
Tubule83 44 of 4 0.70Down
Hindgut123 74 of 4 1.10None
Heart65 14 of 4 0.56Down
Fat body70 34 of 4 0.60Down
Ovary200 54 of 4 1.70Up
Testis48 24 of 4 0.40Down
Male accessory glands107 44 of 4 0.90None
Virgin spermatheca54 14 of 4 0.46Down
Mated spermatheca62 74 of 4 0.53Down
Adult carcass69 44 of 4 0.60Down
Larval CNS87 64 of 4 0.74Down
Larval Salivary gland104 64 of 4 0.89None
Larval midgut35 34 of 4 0.30Down
Larval tubule89 64 of 4 0.80Down
Larval hindgut90 44 of 4 0.77Down
Larval fat body78 44 of 4 0.70Down
Larval trachea162 74 of 4 1.39Up
Larval carcass100 74 of 4 0.86None
S2 cells (growing)139 24 of 4 1.19Up
Whole fly117 24 of 4

Looking for CG6054-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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