Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6057-RA through 18771 annotations produced 1 hits



SMC1 (SMC1):

Annotation Number : CG6057
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040283
Gbrowse : chr3R:19884023-19888538 (+) // 100.0 //
Probeset : 1628112_at
Accessions : protein= NP_651211;, nucleotide= NM_142954;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from direct assay /// 0005694 //
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred fro
FlyMine data for FBgn0040283.
Homophila reports that CG6057 is a close match (7e-15) to human gene BAM;CDLS3;CSPG6;HCAP;SMC3 (NP_005436), a gene associated with Cornelia de Lange syndrome 3, 610759 (3).
TRiP has 2 RNAi stocks for FBgn0040283 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040283 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain171 44 of 4 1.50Up
Head125 64 of 4 1.10None
Eye94 44 of 4 0.80Down
Thoracicoabdominal ganglion124 44 of 4 1.10None
Salivary gland156 94 of 4 1.34Up
Crop115 114 of 4 1.00None
Midgut114 74 of 4 1.00None
Tubule83 44 of 4 0.70Down
Hindgut117 114 of 4 1.00None
Heart49 44 of 4 0.42Down
Fat body89 134 of 4 0.76Down
Ovary280 34 of 4 2.40Up
Testis63 34 of 4 0.50Down
Male accessory glands130 84 of 4 1.10None
Virgin spermatheca115 74 of 4 0.98None
Mated spermatheca118 34 of 4 1.01None
Adult carcass99 64 of 4 0.80None
Larval CNS325 164 of 4 2.77Up
Larval Salivary gland152 94 of 4 1.30Up
Larval midgut94 54 of 4 0.81Down
Larval tubule91 24 of 4 0.80Down
Larval hindgut92 84 of 4 0.78None
Larval fat body91 94 of 4 0.80None
Larval trachea100 34 of 4 0.85None
Larval carcass108 44 of 4 0.92None
S2 cells (growing)207 94 of 4 1.76Up
Whole fly117 54 of 4

Looking for CG6057-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime