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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6061-RA through 18771 annotations produced 1 hits



Myb-interacting protein 120 (mip120):

Annotation Number : CG6061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033846
Gbrowse : chr2R:9393946-9400617 (+) // 100.0 //
Probeset : 1630099_at
Accessions : protein= NP_001163143; /// NP_610879;, nucleotide= NM_001169672; /// NM_137035;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 000
Interpro : 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /
FlyMine data for FBgn0033846.
TRiP has 1 RNAi stocks for FBgn0033846 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033846 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain93 24 of 4 1.00None
Head36 24 of 4 0.40Down
Eye39 24 of 4 0.43Down
Thoracicoabdominal ganglion58 24 of 4 0.60Down
Salivary gland108 94 of 4 1.18None
Crop41 34 of 4 0.40Down
Midgut31 24 of 4 0.30Down
Tubule56 14 of 4 0.60Down
Hindgut42 24 of 4 0.50Down
Heart20 04 of 4 0.23Down
Fat body33 44 of 4 0.37Down
Ovary315 84 of 4 3.50Up
Testis17 14 of 4 0.20Down
Male accessory glands68 54 of 4 0.80Down
Virgin spermatheca81 74 of 4 0.89None
Mated spermatheca90 74 of 4 0.99None
Adult carcass38 44 of 4 0.40Down
Larval CNS203 154 of 4 2.23Up
Larval Salivary gland161 94 of 4 1.77Up
Larval midgut43 24 of 4 0.47Down
Larval tubule40 34 of 4 0.40Down
Larval hindgut61 44 of 4 0.68Down
Larval fat body43 44 of 4 0.50Down
Larval trachea64 74 of 4 0.71Down
Larval carcass64 34 of 4 0.70Down
S2 cells (growing)151 14 of 4 1.66Up
Whole fly91 54 of 4

Looking for CG6061-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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