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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6081-RA through 18771 annotations produced 1 hits



Cyp28d2 (Cyp28d2):

Annotation Number : CG6081
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031688
Gbrowse : chr2L:5207307-5209219 (+) // 100.0 //
Probeset : 1624911_at
Accessions : protein= NP_608911;, nucleotide= NM_135067;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0031688.
Homophila reports that CG6081 is a close match (6e-11) to human gene ARO;CYP19;CYP19A1 (NP_112503), a gene associated with Aromatase deficiency (3);Aromatase excess syndrome, 139300 (3);Pseudohermaphroditism, female, due to placental aromatase deficiency (3).
VDRC has 2 RNAi stocks for FBgn0031688 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 14 of 4 2.30Up
Head14 33 of 4 1.20None
Eye12 04 of 4 0.99None
Thoracicoabdominal ganglion32 14 of 4 2.60Up
Salivary gland16 21 of 4 1.38None
Crop29 14 of 4 2.40Up
Midgut15 24 of 4 1.30None
Tubule16 03 of 4 1.30Up
Hindgut26 14 of 4 2.20Up
Heart12 14 of 4 1.01None
Fat body9 40 of 4 0.77None
Ovary4 00 of 4 0.30Down
Testis99 44 of 4 8.20Up
Male accessory glands12 20 of 4 1.00None
Virgin spermatheca31 34 of 4 2.58Up
Mated spermatheca15 24 of 4 1.28None
Adult carcass13 21 of 4 1.10None
Larval CNS11 34 of 4 0.95None
Larval Salivary gland12 03 of 4 1.02None
Larval midgut390 604 of 432.05Up
Larval tubule13 13 of 4 1.10None
Larval hindgut21 24 of 4 1.79Up
Larval fat body15 43 of 4 1.30None
Larval trachea44 84 of 4 3.64Up
Larval carcass15 34 of 4 1.29None
S2 cells (growing)12 13 of 4 0.99None
Whole fly12 13 of 4

Looking for CG6081-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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