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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6093-RA through 18771 annotations produced 1 hits



abnormal oocyte (abo):

Annotation Number : CG6093
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000018
Gbrowse : chr2L:10973441-10975273 (-) // 100.0 //
Probeset : 1628418_at
Accessions : protein= NP_524784;, nucleotide= NM_080045;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005700 // polytene chromosome // inferred from direct assay
Interpro : 0003682 // chromatin binding // inferred from direct assay /// 0030528 // transcription regulator activity // inferred f
FlyMine data for FBgn0000018.
VDRC has 2 RNAi stocks for FBgn0000018 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 14 of 4 0.40Down
Head40 34 of 4 0.60Down
Eye36 24 of 4 0.52Down
Thoracicoabdominal ganglion37 34 of 4 0.50Down
Salivary gland74 54 of 4 1.05None
Crop71 34 of 4 1.00None
Midgut76 24 of 4 1.10None
Tubule70 14 of 4 1.00None
Hindgut55 24 of 4 0.80Down
Heart56 44 of 4 0.80None
Fat body67 114 of 4 0.95None
Ovary168 54 of 4 2.40Up
Testis86 14 of 4 1.20Up
Male accessory glands81 34 of 4 1.20None
Virgin spermatheca58 04 of 4 0.83None
Mated spermatheca65 64 of 4 0.93None
Adult carcass47 54 of 4 0.70Down
Larval CNS78 04 of 4 1.11None
Larval Salivary gland92 24 of 4 1.30Up
Larval midgut65 34 of 4 0.92None
Larval tubule71 44 of 4 1.00None
Larval hindgut75 44 of 4 1.07None
Larval fat body65 74 of 4 0.90None
Larval trachea93 114 of 4 1.32Up
Larval carcass71 44 of 4 1.01None
S2 cells (growing)273 04 of 4 3.87Up
Whole fly70 44 of 4

Looking for CG6093-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime