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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6106-RA through 18771 annotations produced 1 hits



(CG6106):

Annotation Number : CG6106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030914
Gbrowse : chrX:18252915-18255995 (+) // 100.0 //
Probeset : 1628793_at
Accessions : protein= NP_573287;, nucleotide= NM_133059;
Interpro : "0004038 // allantoinase activity // inferred from sequence or structural similarity /// 0004038 // allantoinase activit
FlyMine data for FBgn0030914.
BDGP gene expression has embryonic in situ data for CG6106: 9 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0030914 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 10 of 4 0.40None
Head19 ± 34 of 4 0.90None
Eye10 ± 13 of 4 0.52None
Thoracicoabdominal ganglion11 ± 21 of 4 0.50None
Salivary gland15 ± 31 of 4 0.77None
Crop69 ± 34 of 4 3.30Up
Midgut21 ± 23 of 4 1.00None
Tubule14 ± 03 of 4 0.70Down
Hindgut36 ± 24 of 4 1.70Up
Heart33 ± 34 of 4 1.63Up
Fat body15 ± 83 of 4 0.76None
Ovary18 ± 24 of 4 0.90None
Testis7 ± 10 of 4 0.40Down
Male accessory glands31 ± 14 of 4 1.50Up
Virgin spermatheca13 ± 13 of 4 0.65None
Mated spermatheca17 ± 24 of 4 0.86None
Adult carcass49 ± 04 of 4 2.40Up
Larval CNS8 ± 13 of 4 0.40Down
Larval Salivary gland21 ± 24 of 4 1.05None
Larval midgut27 ± 14 of 4 1.33None
Larval tubule13 ± 13 of 4 0.70None
Larval hindgut68 ± 44 of 4 3.30Up
Larval fat body9 ± 20 of 4 0.50None
Larval trachea12 ± 24 of 4 0.62None
Larval carcass224 ± 194 of 410.87Up
S2 cells (growing)8 ± 00 of 4 0.41Down
Whole fly20 ± 33 of 4

Looking for CG6106-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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