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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6115-RA through 18771 annotations produced 1 hits



(CG6115):

Annotation Number : CG6115
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040985
Gbrowse : chr2L:16887121-16887941 (-) // 100.0 //
Probeset : 1624583_at
Accessions : protein= NP_652578;, nucleotide= NM_144321;
FlyMine data for FBgn0040985.
BDGP gene expression has embryonic in situ data for CG6115: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0040985 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1450 364 of 4 1.30Up
Head1844 714 of 4 1.60Up
Eye1610 384 of 4 1.42Up
Thoracicoabdominal ganglion2004 414 of 4 1.80Up
Salivary gland784 274 of 4 0.69None
Crop1230 194 of 4 1.10None
Midgut768 64 of 4 0.70None
Tubule1173 214 of 4 1.00None
Hindgut1550 114 of 4 1.40Up
Heart1610 644 of 4 1.42Up
Fat body1516 1654 of 4 1.34Up
Ovary606 104 of 4 0.50Down
Testis638 74 of 4 0.60Down
Male accessory glands883 394 of 4 0.80None
Virgin spermatheca2116 994 of 4 1.87Up
Mated spermatheca2207 1104 of 4 1.95Up
Adult carcass2588 1254 of 4 2.30Up
Larval CNS1094 504 of 4 0.97None
Larval Salivary gland1187 434 of 4 1.05None
Larval midgut804 254 of 4 0.71None
Larval tubule1091 144 of 4 1.00None
Larval hindgut1336 514 of 4 1.18None
Larval fat body3179 3664 of 4 2.80Up
Larval trachea1381 564 of 4 1.22None
Larval carcass1577 1114 of 4 1.39Up
S2 cells (growing)1491 44 of 4 1.32None
Whole fly1133 1204 of 4

Looking for CG6115-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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