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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6117-RB through 18771 annotations produced 1 hits



Protein-kinase-like-72A (Pka-C3):

Annotation Number : CG6117
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000489
Gbrowse : chr3L:15918903-15947897 (-) // 100.0 //
Probeset : 1635928_a_at
Accessions : protein= NP_524097; /// NP_730083;, nucleotide= NM_079373; /// NM_168638;
Pathway : 0005952 // cAMP-dependent protein kinase complex // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0000489.
BDGP gene expression has embryonic in situ data for Pka-C3: 57 pix of staining in 12 body parts.
Homophila reports that CG6117 is a close match (7e-11) to human gene BEK;CFD1;FGFR2;JWS (NP_075259), a gene associated with Antley-Bixler syndrome, 207410 (;Apert syndrome, 101200 (3);Beare-Stevenson cutis gyrata syndrome, 123790 (3);Craniofacial-skeletal-dermatologic dysplasia (3);Craniosynostosis, nonspecific (3);Crouzon syndrome, 123500 (3);Gastric cancer, somatic, 137215 (3);Jackson-Weiss syndrome, 123150 (3);Pfeiffer syndrome, 101600 (3);Saethre-Chotzen syndrome, 101400 (3).
TRiP has 2 RNAi stocks for FBgn0000489 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain276 94 of 4 1.20None
Head278 164 of 4 1.20None
Eye1164 734 of 4 5.00Up
Thoracicoabdominal ganglion40 44 of 4 0.20Down
Salivary gland11 40 of 4 0.05Down
Crop774 224 of 4 3.30Up
Midgut59 24 of 4 0.30Down
Tubule473 1604 of 4 2.00None
Hindgut988 104 of 4 4.20Up
Heart378 344 of 4 1.62Up
Fat body34 44 of 4 0.15Down
Ovary63 94 of 4 0.30Down
Testis544 324 of 4 2.30Up
Male accessory glands184 64 of 4 0.80Down
Virgin spermatheca89 84 of 4 0.38Down
Mated spermatheca140 174 of 4 0.60Down
Adult carcass352 164 of 4 1.50Up
Larval CNS25 34 of 4 0.11Down
Larval Salivary gland7 20 of 4 0.03Down
Larval midgut67 54 of 4 0.29Down
Larval tubule818 464 of 4 3.50Up
Larval hindgut137 24 of 4 0.59Down
Larval fat body56 212 of 4 0.20Down
Larval trachea72 594 of 4 0.31Down
Larval carcass651 194 of 4 2.80Up
S2 cells (growing)121 104 of 4 0.52Down
Whole fly233 134 of 4

Looking for CG6117-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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