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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6126-RA through 18771 annotations produced 1 hits



(CG6126):

Annotation Number : CG6126
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038407
Gbrowse : chr3R:12023723-12028802 (-) // 100.0 //
Probeset : 1634767_at
Accessions : protein= NP_650528;, nucleotide= NM_142271;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038407.
BDGP gene expression has embryonic in situ data for CG6126: 26 pix of staining in 15 body parts.
Homophila reports that CG6126 is a close match (7e-31) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
BioGrid reports that CG6126 interacts with CG6913 CG9695 .
VDRC has 1 RNAi stocks for FBgn0038407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain729 154 of 4 2.40Up
Head873 864 of 4 2.80Up
Eye462 164 of 4 1.49Up
Thoracicoabdominal ganglion1050 594 of 4 3.40Up
Salivary gland145 84 of 4 0.47Down
Crop58 44 of 4 0.20Down
Midgut134 54 of 4 0.40Down
Tubule2316 4064 of 4 7.50Up
Hindgut1177 294 of 4 3.80Up
Heart533 614 of 4 1.72Up
Fat body594 824 of 4 1.92Up
Ovary316 84 of 4 1.00None
Testis8 10 of 4 0.00Down
Male accessory glands72 34 of 4 0.20Down
Virgin spermatheca179 94 of 4 0.58Down
Mated spermatheca227 104 of 4 0.73Down
Adult carcass625 414 of 4 2.00Up
Larval CNS279 234 of 4 0.90None
Larval Salivary gland24 24 of 4 0.08Down
Larval midgut438 494 of 4 1.42None
Larval tubule2013 1074 of 4 6.50Up
Larval hindgut779 464 of 4 2.52Up
Larval fat body78 174 of 4 0.30Down
Larval trachea443 774 of 4 1.43Up
Larval carcass594 524 of 4 1.92Up
S2 cells (growing)84 24 of 4 0.27Down
Whole fly309 184 of 4

Looking for CG6126-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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