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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6129-RB through 18771 annotations produced 1 hits



(CG6129):

Annotation Number : CG6129
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039152
Gbrowse : chr3R:19946024-19953917 (+) // 100.0 //
Probeset : 1634341_a_at
Accessions : protein= NP_651216;, nucleotide= NM_142959;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0035253 // ciliary rootlet // inferred from sequence or st
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0030528 // transcription regulator activity //
FlyMine data for FBgn0039152.
VDRC has 3 RNAi stocks for FBgn0039152 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 12 of 4 0.10Down
Head55 ± 44 of 4 0.90None
Eye27 ± 34 of 4 0.46Down
Thoracicoabdominal ganglion8 ± 12 of 4 0.10Down
Salivary gland11 ± 30 of 4 0.19Down
Crop8 ± 11 of 4 0.10Down
Midgut15 ± 13 of 4 0.30Down
Tubule8 ± 11 of 4 0.10Down
Hindgut10 ± 22 of 4 0.20Down
Heart80 ± 34 of 4 1.35Up
Fat body313 ± 294 of 4 5.28Up
Ovary6 ± 13 of 4 0.10Down
Testis610 ± 264 of 410.30Up
Male accessory glands9 ± 10 of 4 0.20Down
Virgin spermatheca130 ± 124 of 4 2.19Up
Mated spermatheca390 ± 124 of 4 6.58Up
Adult carcass102 ± 34 of 4 1.70Up
Larval CNS37 ± 34 of 4 0.63Down
Larval Salivary gland27 ± 44 of 4 0.47Down
Larval midgut21 ± 24 of 4 0.36Down
Larval tubule9 ± 13 of 4 0.20Down
Larval hindgut4 ± 11 of 4 0.08Down
Larval fat body486 ± 104 of 4 8.20Up
Larval trachea8 ± 61 of 4 0.15Down
Larval carcass10 ± 10 of 4 0.18Down
S2 cells (growing)4 ± 11 of 4 0.07Down
Whole fly59 ± 14 of 4

Looking for CG6129-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime