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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6137-RA through 18771 annotations produced 1 hits



aubergine (aub):

Annotation Number : CG6137
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000146
Gbrowse : chr2L:10997815-11001489 (-) // 100.0 //
Probeset : 1631626_at
Accessions : protein= NP_001097144; /// NP_476734;, nucleotide= NM_001103674; /// NM_057386;
Pathway : via spliceosome // inferred by curator /// 0001556 // oocyte maturation // inferred from mutant phenotype /// 0006342 /
Interpro : 0005737 // cytoplasm // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from direct
FlyMine data for FBgn0000146.
BioGrid reports that CG6137 interacts with CG10901 CG10901 CG10901 .
TRiP has 4 RNAi stocks for FBgn0000146 available for purchase.
VDRC has 3 RNAi stocks for FBgn0000146 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 22 of 4 0.10Down
Head4 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion10 ± 21 of 4 0.10Down
Salivary gland17 ± 30 of 4 0.11Down
Crop4 ± 10 of 4 0.00Down
Midgut11 ± 21 of 4 0.10Down
Tubule13 ± 30 of 4 0.10Down
Hindgut4 ± 10 of 4 0.00Down
Heart76 ± 44 of 4 0.49Down
Fat body10 ± 71 of 4 0.07Down
Ovary338 ± 104 of 4 2.20Up
Testis93 ± 14 of 4 0.60Down
Male accessory glands7 ± 10 of 4 0.00Down
Virgin spermatheca4 ± 20 of 4 0.03Down
Mated spermatheca4 ± 20 of 4 0.03Down
Adult carcass15 ± 71 of 4 0.10Down
Larval CNS18 ± 04 of 4 0.12Down
Larval Salivary gland5 ± 10 of 4 0.04Down
Larval midgut10 ± 20 of 4 0.07Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.02Down
Larval fat body26 ± 64 of 4 0.20Down
Larval trachea3 ± 20 of 4 0.02Down
Larval carcass8 ± 00 of 4 0.06Down
S2 cells (growing)72 ± 54 of 4 0.47Down
Whole fly154 ± 134 of 4

Looking for CG6137-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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