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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6145-RA through 18771 annotations produced 1 hits



(CG6145):

Annotation Number : CG6145
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033853
Gbrowse : chr2R:9424873-9434493 (-) // 100.0 //
Probeset : 1640429_a_at
Accessions : protein= NP_001163145; /// NP_001163146; /// NP_610884; /// NP_725314; /// NP_725315;, nucleotide= NM_001169674; /// NM_001169675; /// NM_137040; /// NM_166003; /// NM_166004;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0003951 // NAD+ kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred f
FlyMine data for FBgn0033853.
VDRC has 3 RNAi stocks for FBgn0033853 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain209 54 of 4 0.40Down
Head487 104 of 4 1.00None
Eye388 264 of 4 0.83None
Thoracicoabdominal ganglion248 54 of 4 0.50Down
Salivary gland348 254 of 4 0.75Down
Crop1164 274 of 4 2.50Up
Midgut374 184 of 4 0.80None
Tubule339 294 of 4 0.70Down
Hindgut1207 124 of 4 2.60Up
Heart2625 964 of 4 5.62Up
Fat body2959 3044 of 4 6.34Up
Ovary324 54 of 4 0.70Down
Testis115 64 of 4 0.20Down
Male accessory glands368 264 of 4 0.80None
Virgin spermatheca1406 1244 of 4 3.01Up
Mated spermatheca1593 544 of 4 3.41Up
Adult carcass1814 994 of 4 3.90Up
Larval CNS157 114 of 4 0.34Down
Larval Salivary gland151 34 of 4 0.32Down
Larval midgut393 524 of 4 0.84None
Larval tubule256 74 of 4 0.50Down
Larval hindgut240 54 of 4 0.52Down
Larval fat body1377 1094 of 4 2.90Up
Larval trachea384 444 of 4 0.82None
Larval carcass632 704 of 4 1.35None
S2 cells (growing)185 14 of 4 0.40Down
Whole fly467 324 of 4

Looking for CG6145-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime