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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6163-RA through 18771 annotations produced 1 hits



(CG6163):

Annotation Number : CG6163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036155
Gbrowse : chr3L:11355085-11357985 (-) // 100.0 //
Probeset : 1628728_at
Accessions : protein= NP_648460;, nucleotide= NM_140203;
FlyMine data for FBgn0036155.
BioGrid reports that CG6163 interacts with CG7945 CG8854 CG9160 CG9432 .
VDRC has 1 RNAi stocks for FBgn0036155 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 24 of 4 1.30None
Head5 21 of 4 0.70None
Eye10 13 of 4 1.26None
Thoracicoabdominal ganglion10 12 of 4 1.20None
Salivary gland13 30 of 4 1.58None
Crop15 14 of 4 1.80Up
Midgut10 12 of 4 1.20None
Tubule8 01 of 4 1.00None
Hindgut6 23 of 4 0.80None
Heart11 12 of 4 1.40None
Fat body16 34 of 4 1.94Up
Ovary10 13 of 4 1.20None
Testis5 12 of 4 0.70None
Male accessory glands19 33 of 4 2.30Up
Virgin spermatheca8 20 of 4 0.98None
Mated spermatheca7 10 of 4 0.91None
Adult carcass20 14 of 4 2.40Up
Larval CNS14 24 of 4 1.67Up
Larval Salivary gland10 13 of 4 1.25None
Larval midgut7 10 of 4 0.86None
Larval tubule11 03 of 4 1.30None
Larval hindgut9 04 of 4 1.06None
Larval fat body21 14 of 4 2.50Up
Larval trachea12 64 of 4 1.51None
Larval carcass7 22 of 4 0.94None
S2 cells (growing)4 02 of 4 0.59Down
Whole fly8 12 of 4

Looking for CG6163-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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