FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6164-RA through 18771 annotations produced 1 hits

CG6164 (Npc2f):

Annotation Number : CG6164
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039154
Gbrowse : chr3R:19963616-19966662 (+) // 100.0 //
Probeset : 1634158_at
Accessions : protein= NP_651219;, nucleotide= NM_142962;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039154.
VDRC has 2 RNAi stocks for FBgn0039154 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	2 of 4	0.00	Down
Head	8 ± 0	4 of 4	0.00	Down
Eye	6 ± 1	1 of 4	0.03	Down
Thoracicoabdominal ganglion	5 ± 1	1 of 4	0.00	Down
Salivary gland	9 ± 2	0 of 4	0.05	Down
Crop	3 ± 1	0 of 4	0.00	Down
Midgut	2262 ± 127	4 of 4	12.00	Up
Tubule	4 ± 0	0 of 4	0.00	Down
Hindgut	5 ± 0	0 of 4	0.00	Down
Heart	10 ± 1	4 of 4	0.06	Down
Fat body	29 ± 3	4 of 4	0.16	Down
Ovary	1 ± 1	1 of 4	0.00	Down
Testis	9 ± 0	4 of 4	0.10	Down
Male accessory glands	4 ± 1	0 of 4	0.00	Down
Virgin spermatheca	28 ± 0	4 of 4	0.15	Down
Mated spermatheca	25 ± 3	4 of 4	0.14	Down
Adult carcass	21 ± 2	4 of 4	0.10	Down
Larval CNS	6 ± 0	4 of 4	0.04	Down
Larval Salivary gland	10 ± 1	3 of 4	0.05	Down
Larval midgut	3194 ± 169	4 of 4	16.95	Up
Larval tubule	5 ± 0	2 of 4	0.00	Down
Larval hindgut	198 ± 10	4 of 4	1.05	None
Larval fat body	227 ± 24	4 of 4	1.20	None
Larval trachea	6 ± 2	1 of 4	0.04	Down
Larval carcass	7 ± 1	3 of 4	0.04	Down
S2 cells (growing)	5 ± 0	4 of 4	0.03	Down
Whole fly	188 ± 14	4 of 4

Looking for CG6164-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720