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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG6168-RB through 18771 annotations produced 1 hits


/// /// CG6168 /// (CG6168 /// DereGG13925 /// DsimGD12810 /// DyakGE20221):

Annotation Number : CG6168
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036154
Gbrowse : chr3L:11313790-11314819 (-) // 100.0 //
Probeset : 1636498_at
Accessions : protein= NP_648459;, nucleotide= NM_140202;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0008233 // peptidase act
FlyMine data for FBgn0036154.
VDRC has 2 RNAi stocks for FBgn0036154 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head6 ± 10 of 4 0.20Down
Eye3 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland13 ± 60 of 4 0.31Down
Crop6 ± 20 of 4 0.20Down
Midgut9 ± 20 of 4 0.20Down
Tubule7 ± 00 of 4 0.20Down
Hindgut7 ± 10 of 4 0.20Down
Heart4 ± 00 of 4 0.11Down
Fat body8 ± 40 of 4 0.19Down
Ovary1 ± 00 of 4 0.00Down
Testis10 ± 20 of 4 0.20Down
Male accessory glands4421 ± 1164 of 4102.50Up
Virgin spermatheca14 ± 10 of 4 0.33Down
Mated spermatheca15 ± 20 of 4 0.36Down
Adult carcass8 ± 10 of 4 0.20Down
Larval CNS2 ± 00 of 4 0.05Down
Larval Salivary gland2 ± 00 of 4 0.06Down
Larval midgut9 ± 20 of 4 0.21Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut6 ± 00 of 4 0.15Down
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea0 ± 00 of 4 0.02Down
Larval carcass10 ± 00 of 4 0.24Down
S2 cells (growing)2 ± 00 of 4 0.06Down
Whole fly43 ± 24 of 4

Looking for CG6168-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime