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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6174-RA through 18771 annotations produced 1 hits



gridlock (Arp87C):

Annotation Number : CG6174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011745
Gbrowse : chr3R:8517457-8519954 (+) // 100.0 //
Probeset : 1639121_at
Accessions : protein= NP_524331;, nucleotide= NM_079607;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from seque
FlyMine data for FBgn0011745.
BDGP gene expression has embryonic in situ data for Arp87C: 16 pix of staining in 14 body parts.
Homophila reports that CG6174 is a close match (6e-121) to human gene ACTA2;ACTSA;AAT6 (NP_001604), a gene associated with Aortic aneurysm, familial thoracic 6, 611788 (3).
BioGrid reports that CG6174 interacts with CG6258 CG3510 .
TRiP has 1 RNAi stocks for FBgn0011745 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain677 ± 124 of 4 1.30Up
Head522 ± 104 of 4 1.00None
Eye634 ± 334 of 4 1.26Up
Thoracicoabdominal ganglion981 ± 234 of 4 1.90Up
Salivary gland863 ± 254 of 4 1.71Up
Crop813 ± 284 of 4 1.60Up
Midgut977 ± 164 of 4 1.90Up
Tubule947 ± 314 of 4 1.90Up
Hindgut913 ± 344 of 4 1.80Up
Heart485 ± 134 of 4 0.96None
Fat body449 ± 124 of 4 0.89Down
Ovary567 ± 54 of 4 1.10Up
Testis246 ± 44 of 4 0.50Down
Male accessory glands696 ± 444 of 4 1.40Up
Virgin spermatheca769 ± 194 of 4 1.52Up
Mated spermatheca958 ± 374 of 4 1.90Up
Adult carcass462 ± 64 of 4 0.90Down
Larval CNS853 ± 254 of 4 1.69Up
Larval Salivary gland1724 ± 684 of 4 3.41Up
Larval midgut1257 ± 164 of 4 2.49Up
Larval tubule1291 ± 184 of 4 2.60Up
Larval hindgut1225 ± 284 of 4 2.42Up
Larval fat body574 ± 534 of 4 1.10None
Larval trachea1223 ± 644 of 4 2.42Up
Larval carcass1078 ± 444 of 4 2.13Up
S2 cells (growing)858 ± 54 of 4 1.70Up
Whole fly505 ± 104 of 4

Looking for CG6174-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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