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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6175-RB through 18771 annotations produced 1 hits



(CG6175):

Annotation Number : CG6175
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036152
Gbrowse : chr3L:11281021-11287887 (-) // 100.0 //
Probeset : 1638873_at
Accessions : protein= NP_648457;, nucleotide= NM_140200;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036152.
BDGP gene expression has embryonic in situ data for CG6175: 4 pix of staining in 1 body parts.
BioGrid reports that CG6175 interacts with CG8079 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 24 of 4 0.40Down
Head31 44 of 4 0.90None
Eye19 24 of 4 0.55Down
Thoracicoabdominal ganglion12 04 of 4 0.30Down
Salivary gland38 94 of 4 1.12None
Crop45 44 of 4 1.30None
Midgut27 44 of 4 0.80None
Tubule36 14 of 4 1.10None
Hindgut39 44 of 4 1.10None
Heart10 14 of 4 0.31Down
Fat body74 94 of 4 2.17Up
Ovary92 54 of 4 2.70Up
Testis6 04 of 4 0.20Down
Male accessory glands67 64 of 4 1.90Up
Virgin spermatheca58 124 of 4 1.68None
Mated spermatheca44 54 of 4 1.27None
Adult carcass26 24 of 4 0.80None
Larval CNS7 14 of 4 0.22Down
Larval Salivary gland31 44 of 4 0.90None
Larval midgut30 24 of 4 0.87None
Larval tubule27 14 of 4 0.80None
Larval hindgut44 34 of 4 1.28None
Larval fat body16 34 of 4 0.50Down
Larval trachea18 44 of 4 0.52Down
Larval carcass31 24 of 4 0.91None
S2 cells (growing)16 14 of 4 0.46Down
Whole fly34 24 of 4

Looking for CG6175-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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