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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6178-RA through 18771 annotations produced 1 hits



(CG6178):

Annotation Number : CG6178
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039156
Gbrowse : chr3R:19978035-19980618 (+) // 100.0 //
Probeset : 1627423_at
Accessions : protein= NP_651221;, nucleotide= NM_142964;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004321 // fatty-acyl-CoA synthase activity //
FlyMine data for FBgn0039156.
BDGP gene expression has embryonic in situ data for CG6178: 17 pix of staining in 13 body parts.
Homophila reports that CG6178 is a close match (2e-13) to human gene ACS4;ACSL4;FACL4;MRX63 (NP_075266), a gene associated with Mental retardation, X-linked nonspecific, 63, 300387 (3).
TRiP has 1 RNAi stocks for FBgn0039156 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039156 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 24 of 4 0.30Down
Head172 134 of 4 0.60Down
Eye55 34 of 4 0.18Down
Thoracicoabdominal ganglion63 44 of 4 0.20Down
Salivary gland68 44 of 4 0.22Down
Crop1171 204 of 4 3.80Up
Midgut674 294 of 4 2.20Up
Tubule1420 564 of 4 4.60Up
Hindgut496 124 of 4 1.60Up
Heart900 474 of 4 2.90Up
Fat body1159 1134 of 4 3.73Up
Ovary314 74 of 4 1.00None
Testis67 44 of 4 0.20Down
Male accessory glands55 24 of 4 0.20Down
Virgin spermatheca486 114 of 4 1.57Up
Mated spermatheca388 214 of 4 1.25Up
Adult carcass692 314 of 4 2.20Up
Larval CNS150 84 of 4 0.48Down
Larval Salivary gland88 24 of 4 0.29Down
Larval midgut677 484 of 4 2.18Up
Larval tubule327 134 of 4 1.10None
Larval hindgut196 104 of 4 0.63Down
Larval fat body198 214 of 4 0.60Down
Larval trachea68 144 of 4 0.22Down
Larval carcass76 94 of 4 0.25Down
S2 cells (growing)261 54 of 4 0.84Down
Whole fly310 134 of 4

Looking for CG6178-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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