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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6185-RA through 18771 annotations produced 1 hits



CG6185 (Ir68a):

Annotation Number : CG6185
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036150
Gbrowse : chr3L:11226100-11229038 (-) // 100.0 //
Probeset : 1640580_at
Accessions : protein= NP_648455;, nucleotide= NM_140198;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005234 // extracellular-gl
FlyMine data for FBgn0036150.
VDRC has 2 RNAi stocks for FBgn0036150 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 ± 14 of 4 3.60Up
Head14 ± 03 of 4 1.30None
Eye7 ± 22 of 4 0.69None
Thoracicoabdominal ganglion11 ± 12 of 4 1.10None
Salivary gland14 ± 20 of 4 1.30None
Crop8 ± 10 of 4 0.80None
Midgut4 ± 10 of 4 0.40Down
Tubule5 ± 00 of 4 0.50Down
Hindgut7 ± 00 of 4 0.70None
Heart3 ± 11 of 4 0.33Down
Fat body9 ± 21 of 4 0.87None
Ovary6 ± 10 of 4 0.60None
Testis7 ± 10 of 4 0.70None
Male accessory glands36 ± 24 of 4 3.30Up
Virgin spermatheca7 ± 00 of 4 0.72None
Mated spermatheca8 ± 00 of 4 0.76None
Adult carcass11 ± 41 of 4 1.00None
Larval CNS8 ± 12 of 4 0.74None
Larval Salivary gland17 ± 20 of 4 1.56None
Larval midgut10 ± 40 of 4 0.94None
Larval tubule34 ± 24 of 4 3.20Up
Larval hindgut4 ± 10 of 4 0.39Down
Larval fat body11 ± 10 of 4 1.00None
Larval trachea5 ± 10 of 4 0.49Down
Larval carcass7 ± 10 of 4 0.69None
S2 cells (growing)9 ± 11 of 4 0.86None
Whole fly11 ± 10 of 4

Looking for CG6185-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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