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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6193-RA through 18771 annotations produced 1 hits



Epithelial Adenomatous Polyposis Coli (Apc2):

Annotation Number : CG6193
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026598
Gbrowse : chr3R:19989689-19994036 (+) // 99.88 //
Probeset : 1630322_at
Accessions : protein= NP_477430;, nucleotide= NM_058082;
Pathway : DNA-dependent // traceable author statement"
Interpro : 0005634 // nucleus // traceable author statement /// 0005737 // cytoplasm // traceable author statement /// 0005875 // m
FlyMine data for FBgn0026598.
Homophila reports that CG6193 is a close match (6e-92) to human gene APC;BTPS2;FPC;GS (NP_000029), a gene associated with Adenoma, periampullary (3);Adenomatous polyposis coli, 175100 (3);Brain tumor-polyposis syndrome 2 (3);Colorectal cancer, somatic, 114500 (3);Desmoid disease, hereditary, 135290 (3);Gardner syndrome (3);Gastric cancer, somatic, 137215 (3);Hepatoblastoma (3).
BioGrid reports that CG6193 interacts with CG4889 CG1451 CG1451 CG1451 CG1451 CG1451 CG1451 CG1451 CG1451 CG1451 CG1451 EG58 CG11579 EG1499 CG11579 CG11579 .
TRiP has 2 RNAi stocks for FBgn0026598 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026598 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.40Down
Head4 ± 10 of 4 0.50Down
Eye8 ± 01 of 4 0.93None
Thoracicoabdominal ganglion5 ± 20 of 4 0.60None
Salivary gland19 ± 30 of 4 2.04None
Crop10 ± 10 of 4 1.10None
Midgut8 ± 10 of 4 0.90None
Tubule3 ± 00 of 4 0.40Down
Hindgut7 ± 00 of 4 0.80None
Heart15 ± 13 of 4 1.63Up
Fat body20 ± 84 of 4 2.22None
Ovary11 ± 14 of 4 1.20None
Testis5 ± 21 of 4 0.50None
Male accessory glands10 ± 10 of 4 1.10None
Virgin spermatheca16 ± 14 of 4 1.78Up
Mated spermatheca20 ± 24 of 4 2.22Up
Adult carcass5 ± 20 of 4 0.60None
Larval CNS8 ± 04 of 4 0.89None
Larval Salivary gland9 ± 11 of 4 1.03None
Larval midgut7 ± 00 of 4 0.83None
Larval tubule6 ± 10 of 4 0.70None
Larval hindgut5 ± 10 of 4 0.54Down
Larval fat body14 ± 30 of 4 1.50None
Larval trachea9 ± 13 of 4 0.98None
Larval carcass7 ± 00 of 4 0.85None
S2 cells (growing)3 ± 10 of 4 0.42Down
Whole fly9 ± 00 of 4

Looking for CG6193-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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