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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6198-RA through 18771 annotations produced 1 hits



CHORD containing protein (CHORD):

Annotation Number : CG6198
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029503
Gbrowse : chr3R:20012086-20013515 (+) // 100.0 //
Probeset : 1628351_at
Accessions : protein= NP_651226;, nucleotide= NM_142969;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from sequen
FlyMine data for FBgn0029503.
BDGP gene expression has embryonic in situ data for CHORD: 4 pix of staining in 1 body parts.
BioGrid reports that CG6198 interacts with CG7387 .
VDRC has 2 RNAi stocks for FBgn0029503 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 24 of 4 0.60Down
Head96 44 of 4 0.60Down
Eye95 54 of 4 0.63Down
Thoracicoabdominal ganglion103 84 of 4 0.70Down
Salivary gland116 84 of 4 0.77Down
Crop164 104 of 4 1.10None
Midgut90 14 of 4 0.60Down
Tubule74 24 of 4 0.50Down
Hindgut110 44 of 4 0.70Down
Heart125 44 of 4 0.84None
Fat body127 84 of 4 0.85None
Ovary274 74 of 4 1.80Up
Testis158 64 of 4 1.10None
Male accessory glands130 84 of 4 0.90None
Virgin spermatheca86 34 of 4 0.58Down
Mated spermatheca93 54 of 4 0.62Down
Adult carcass85 104 of 4 0.60Down
Larval CNS184 74 of 4 1.23Up
Larval Salivary gland155 44 of 4 1.03None
Larval midgut77 14 of 4 0.52Down
Larval tubule134 44 of 4 0.90None
Larval hindgut128 114 of 4 0.85None
Larval fat body133 54 of 4 0.90None
Larval trachea160 234 of 4 1.06None
Larval carcass127 94 of 4 0.85None
S2 cells (growing)123 24 of 4 0.82None
Whole fly150 104 of 4

Looking for CG6198-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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