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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6202-RA through 18771 annotations produced 1 hits



Surfeit 4 (Surf4):

Annotation Number : CG6202
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019925
Gbrowse : chr3R:11169388-11171905 (-) // 100.0 //
Probeset : 1640313_s_at
Accessions : protein= NP_477222; /// NP_732016;, nucleotide= NM_057874; /// NM_169647;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
FlyMine data for FBgn0019925.
BDGP gene expression has embryonic in situ data for Surf4: 12 pix of staining in 11 body parts.
BioGrid reports that CG6202 interacts with CG7054 CG7952 CG9949 .
VDRC has 2 RNAi stocks for FBgn0019925 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain339 74 of 4 0.70Down
Head616 294 of 4 1.30Up
Eye676 374 of 4 1.41Up
Thoracicoabdominal ganglion317 144 of 4 0.70Down
Salivary gland3305 2064 of 4 6.87Up
Crop635 164 of 4 1.30Up
Midgut794 194 of 4 1.70Up
Tubule609 304 of 4 1.30Up
Hindgut455 114 of 4 0.90None
Heart921 294 of 4 1.91Up
Fat body1354 1124 of 4 2.82Up
Ovary534 104 of 4 1.10Up
Testis150 24 of 4 0.30Down
Male accessory glands2570 1244 of 4 5.30Up
Virgin spermatheca991 484 of 4 2.06Up
Mated spermatheca1154 494 of 4 2.40Up
Adult carcass727 94 of 4 1.50Up
Larval CNS431 184 of 4 0.90Down
Larval Salivary gland3488 1564 of 4 7.25Up
Larval midgut972 214 of 4 2.02Up
Larval tubule731 204 of 4 1.50Up
Larval hindgut716 84 of 4 1.49Up
Larval fat body944 964 of 4 2.00Up
Larval trachea927 694 of 4 1.93Up
Larval carcass947 714 of 4 1.97Up
S2 cells (growing)756 294 of 4 1.57Up
Whole fly481 154 of 4

Looking for CG6202-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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