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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6203-RB through 18771 annotations produced 1 hits



Fragile X (Fmr1):

Annotation Number : CG6203
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028734
Gbrowse : chr3R:5929821-5935844 (-) // 100.0 //
Probeset : 1632612_s_at
Accessions : protein= NP_001163580; /// NP_611645; /// NP_731443; /// NP_731444; /// NP_731445; /// NP_731446;, nucleotide= NM_001170109; /// NM_137801; /// NM_169324; /// NM_169325; /// NM_169326; /// NM_169327;
Pathway : embryonic // inferred from mutant phenotype /// 0045475 // locomotor rhythm // inferred from mutant phenotype /// 00481
Interpro : sleep // inferred from mutant phenotype /// 0050807 // regulation of synapse organization // inferred from genetic inte
FlyMine data for FBgn0028734.
BDGP gene expression has embryonic in situ data for Fmr1: 4 pix of staining in 1 body parts.
Homophila reports that CG6203 is a close match (1e-68) to human gene FMR1;FRAXA (NP_002015), a gene associated with Fragile X syndrome, 300624 (3);Fragile X tremor/ataxia syndrome, 300623 (3).
BioGrid reports that CG6203 interacts with CG7671 CG9933 CG6521 CG8854 CG3978 CG12284 CG7439 CG7439 CG7439 CG7439 CG4792 CG10279 CG7726 CG17489 CG7439 CG7726 CG17489 CG10279 CG7439 CG7726 CG17489 CG10279 Dmel CG34387 Dmel CG34387 Dmel CG34387 .
TRiP has 3 RNAi stocks for FBgn0028734 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028734 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 14 of 4 0.50Down
Head19 ± 30 of 4 0.40Down
Eye12 ± 12 of 4 0.25Down
Thoracicoabdominal ganglion24 ± 24 of 4 0.50Down
Salivary gland19 ± 40 of 4 0.37Down
Crop29 ± 14 of 4 0.60Down
Midgut25 ± 30 of 4 0.50Down
Tubule19 ± 12 of 4 0.40Down
Hindgut18 ± 12 of 4 0.30Down
Heart8 ± 20 of 4 0.16Down
Fat body5 ± 50 of 4 0.10Down
Ovary68 ± 34 of 4 1.30Up
Testis48 ± 24 of 4 0.90None
Male accessory glands7 ± 20 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.05Down
Mated spermatheca2 ± 00 of 4 0.05Down
Adult carcass30 ± 40 of 4 0.60Down
Larval CNS33 ± 14 of 4 0.64Down
Larval Salivary gland19 ± 10 of 4 0.38Down
Larval midgut8 ± 20 of 4 0.17Down
Larval tubule23 ± 24 of 4 0.50Down
Larval hindgut17 ± 23 of 4 0.34Down
Larval fat body35 ± 22 of 4 0.70Down
Larval trachea11 ± 10 of 4 0.23Down
Larval carcass19 ± 10 of 4 0.37Down
S2 cells (growing)106 ± 44 of 4 2.02Up
Whole fly52 ± 44 of 4

Looking for CG6203-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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