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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6213-RA through 18771 annotations produced 1 hits



Vacuolar H[+] ATPase G-subunit (Vha13):

Annotation Number : CG6213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026753
Gbrowse : chr3R:15468974-15470134 (-) // 100.0 //
Probeset : 1627006_at
Accessions : protein= NP_477437;, nucleotide= NM_058089;
Pathway : "0000221 // vacuolar proton-transporting V-type ATPase
Interpro : V1 domain // inferred from sequence or structural similarity /// 0000221 // vacuolar proton-transporting V-type ATPase
FlyMine data for FBgn0026753.
BioGrid reports that CG6213 interacts with CG6551 .
TRiP has 1 RNAi stocks for FBgn0026753 available for purchase.
VDRC has 3 RNAi stocks for FBgn0026753 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2318 ± 274 of 4 1.00None
Head2137 ± 104 of 4 1.00None
Eye2091 ± 124 of 4 0.93None
Thoracicoabdominal ganglion2731 ± 344 of 4 1.20Up
Salivary gland11129 ± 2664 of 4 4.95Up
Crop1980 ± 624 of 4 0.90None
Midgut3960 ± 824 of 4 1.80Up
Tubule4963 ± 1034 of 4 2.20Up
Hindgut4468 ± 1164 of 4 2.00Up
Heart1630 ± 494 of 4 0.73Down
Fat body816 ± 1194 of 4 0.36Down
Ovary1984 ± 294 of 4 0.90None
Testis889 ± 224 of 4 0.40Down
Male accessory glands2207 ± 524 of 4 1.00None
Virgin spermatheca1529 ± 294 of 4 0.68Down
Mated spermatheca1562 ± 884 of 4 0.70Down
Adult carcass1629 ± 1014 of 4 0.70Down
Larval CNS1330 ± 724 of 4 0.59Down
Larval Salivary gland3385 ± 874 of 4 1.51Up
Larval midgut3763 ± 1104 of 4 1.67Up
Larval tubule4227 ± 1684 of 4 1.90Up
Larval hindgut4000 ± 534 of 4 1.78Up
Larval fat body1129 ± 664 of 4 0.50Down
Larval trachea2957 ± 994 of 4 1.32Up
Larval carcass2723 ± 1664 of 4 1.21None
S2 cells (growing)1030 ± 454 of 4 0.46Down
Whole fly2247 ± 1204 of 4

Looking for CG6213-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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