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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6218-RA through 18771 annotations produced 1 hits



/// (CG1732 /// CG6218):

Annotation Number : CG6218
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038321
Gbrowse : chr3R:11163629-11168978 (-) // 100.0 //
Probeset : 1629973_at
Accessions : protein= NP_650448;, nucleotide= NM_142191;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038321.
BDGP gene expression has embryonic in situ data for CG6218: 35 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0038321 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038321 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain582 54 of 4 5.50Up
Head267 134 of 4 2.50Up
Eye148 44 of 4 1.41Up
Thoracicoabdominal ganglion690 264 of 4 6.60Up
Salivary gland187 124 of 4 1.79Up
Crop33 24 of 4 0.30Down
Midgut208 14 of 4 2.00Up
Tubule246 264 of 4 2.40Up
Hindgut27 14 of 4 0.30Down
Heart38 14 of 4 0.37Down
Fat body79 174 of 4 0.76None
Ovary124 44 of 4 1.20None
Testis36 44 of 4 0.30Down
Male accessory glands113 64 of 4 1.10None
Virgin spermatheca75 54 of 4 0.72Down
Mated spermatheca81 34 of 4 0.78None
Adult carcass42 44 of 4 0.40Down
Larval CNS511 314 of 4 4.88Up
Larval Salivary gland56 44 of 4 0.53Down
Larval midgut545 184 of 4 5.19Up
Larval tubule877 344 of 4 8.40Up
Larval hindgut70 34 of 4 0.67Down
Larval fat body24 24 of 4 0.20Down
Larval trachea38 44 of 4 0.36Down
Larval carcass76 84 of 4 0.73None
S2 cells (growing)60 54 of 4 0.58Down
Whole fly105 84 of 4

Looking for CG6218-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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