FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6222-RA through 18771 annotations produced 1 hits

suppressor of sable (su(s)):

Annotation Number : CG6222
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003575
Gbrowse : chrX:529919-537793 (+) // 100.0 //
Probeset : 1626259_at
Accessions : protein= NP_476754;, nucleotide= NM_057406;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from elect
FlyMine data for FBgn0003575.
BioGrid reports that CG6222 interacts with CG6779 CG16784 CG10388 CG2155 CG2155 CG4385 .
TRiP has 1 RNAi stocks for FBgn0003575 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003575 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	153 ± 6	4 of 4	1.70	Up
Head	93 ± 3	4 of 4	1.00	None
Eye	106 ± 7	4 of 4	1.15	None
Thoracicoabdominal ganglion	115 ± 8	4 of 4	1.30	None
Salivary gland	121 ± 5	4 of 4	1.31	Up
Crop	118 ± 4	4 of 4	1.30	Up
Midgut	88 ± 1	4 of 4	1.00	None
Tubule	122 ± 9	4 of 4	1.30	Up
Hindgut	96 ± 5	4 of 4	1.00	None
Heart	105 ± 7	4 of 4	1.14	None
Fat body	115 ± 3	4 of 4	1.24	Up
Ovary	229 ± 5	4 of 4	2.50	Up
Testis	31 ± 2	4 of 4	0.30	Down
Male accessory glands	283 ± 12	4 of 4	3.10	Up
Virgin spermatheca	113 ± 9	4 of 4	1.23	None
Mated spermatheca	111 ± 2	4 of 4	1.20	None
Adult carcass	93 ± 2	4 of 4	1.00	None
Larval CNS	212 ± 20	4 of 4	2.30	Up
Larval Salivary gland	157 ± 8	4 of 4	1.70	Up
Larval midgut	89 ± 1	4 of 4	0.97	None
Larval tubule	121 ± 3	4 of 4	1.30	Up
Larval hindgut	118 ± 3	4 of 4	1.28	Up
Larval fat body	100 ± 4	4 of 4	1.10	None
Larval trachea	173 ± 18	4 of 4	1.88	Up
Larval carcass	131 ± 2	4 of 4	1.43	Up
S2 cells (growing)	160 ± 3	4 of 4	1.74	Up
Whole fly	92 ± 6	4 of 4

Looking for CG6222-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720