Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6232-RA through 18771 annotations produced 1 hits



(CG6232):

Annotation Number : CG6232
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032252
Gbrowse : chr2L:10442740-10450080 (+) // 100.0 //
Probeset : 1626273_at
Accessions : protein= NP_001162939; /// NP_609406;, nucleotide= NM_001169468; /// NM_135562;
Pathway : 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix
Interpro : 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // inf
FlyMine data for FBgn0032252.
Homophila reports that CG6232 is a close match (5e-27) to human gene ADAMTSL2;KIAA0605 (NP_055509), a gene associated with Geleophysic dysplasia, 231050 (3).
VDRC has 1 RNAi stocks for FBgn0032252 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 ± 04 of 4 1.80Up
Head16 ± 13 of 4 1.00None
Eye6 ± 11 of 4 0.38Down
Thoracicoabdominal ganglion34 ± 24 of 4 2.10Up
Salivary gland20 ± 51 of 4 1.27None
Crop39 ± 14 of 4 2.40Up
Midgut37 ± 34 of 4 2.30Up
Tubule18 ± 23 of 4 1.20None
Hindgut23 ± 04 of 4 1.40Up
Heart209 ± 284 of 412.83Up
Fat body53 ± 94 of 4 3.26Up
Ovary3 ± 10 of 4 0.20Down
Testis23 ± 04 of 4 1.50Up
Male accessory glands165 ± 64 of 410.10Up
Virgin spermatheca14 ± 03 of 4 0.90None
Mated spermatheca15 ± 12 of 4 0.97None
Adult carcass52 ± 54 of 4 3.20Up
Larval CNS9 ± 02 of 4 0.57Down
Larval Salivary gland10 ± 21 of 4 0.64None
Larval midgut57 ± 14 of 4 3.49Up
Larval tubule7 ± 20 of 4 0.50Down
Larval hindgut22 ± 34 of 4 1.40None
Larval fat body9 ± 02 of 4 0.60Down
Larval trachea12 ± 112 of 4 0.76None
Larval carcass24 ± 14 of 4 1.51Up
S2 cells (growing)32 ± 04 of 4 1.97Up
Whole fly16 ± 14 of 4

Looking for CG6232-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime