Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6234-RA through 18771 annotations produced 1 hits



(CG6234):

Annotation Number : CG6234
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038071
Gbrowse : chr3R:8473781-8478635 (+) // 100.0 //
Probeset : 1640342_at
Accessions : protein= NP_650220;, nucleotide= NM_141963;
Pathway : 0009986 // cell surface // inferred from direct assay /// 0031982 // vesicle // inferred from direct assay
FlyMine data for FBgn0038071.
VDRC has 3 RNAi stocks for FBgn0038071 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 03 of 4 0.50Down
Head47 54 of 4 2.20Up
Eye110 54 of 4 5.04Up
Thoracicoabdominal ganglion9 20 of 4 0.40Down
Salivary gland20 30 of 4 0.91None
Crop10 40 of 4 0.50None
Midgut142 94 of 4 6.50Up
Tubule4 10 of 4 0.20Down
Hindgut14 10 of 4 0.70Down
Heart3 10 of 4 0.17Down
Fat body7 30 of 4 0.32Down
Ovary2 00 of 4 0.10Down
Testis4 00 of 4 0.20Down
Male accessory glands22 31 of 4 1.00None
Virgin spermatheca7 00 of 4 0.34Down
Mated spermatheca10 10 of 4 0.49Down
Adult carcass1 00 of 4 0.10Down
Larval CNS496 254 of 422.67Up
Larval Salivary gland64 60 of 4 2.95Up
Larval midgut122 344 of 4 5.61None
Larval tubule116 174 of 4 5.30Up
Larval hindgut48 64 of 4 2.20Up
Larval fat body190 444 of 4 8.70Up
Larval trachea158 134 of 4 7.25Up
Larval carcass58 144 of 4 2.67None
S2 cells (growing)2 10 of 4 0.12Down
Whole fly21 24 of 4

Looking for CG6234-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime