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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6238-RA through 18771 annotations produced 1 hits



MKP-like (ssh):

Annotation Number : CG6238
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3R:20764424-20770654 (-) // 100.0 //
Probeset : 1637629_a_at
Accessions : protein= NP_001163716; /// NP_001163717; /// NP_524492; /// NP_733063;, nucleotide= NM_001170245; /// NM_001170246; /// NM_079768; /// NM_170184;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0003779 // actin binding // inferred from direct assay /// 0003779 // actin binding // inferred from electronic annotati
BioGrid reports that CG6238 interacts with CG1848 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 44 of 4 0.70Down
Head50 24 of 4 0.40Down
Eye34 54 of 4 0.26Down
Thoracicoabdominal ganglion61 24 of 4 0.50Down
Salivary gland71 114 of 4 0.54Down
Crop68 34 of 4 0.50Down
Midgut35 44 of 4 0.30Down
Tubule45 24 of 4 0.30Down
Hindgut62 54 of 4 0.50Down
Heart47 24 of 4 0.36Down
Fat body35 84 of 4 0.26Down
Ovary314 44 of 4 2.40Up
Testis59 54 of 4 0.40Down
Male accessory glands54 74 of 4 0.40Down
Virgin spermatheca55 64 of 4 0.42Down
Mated spermatheca53 44 of 4 0.40Down
Adult carcass67 14 of 4 0.50Down
Larval CNS98 124 of 4 0.74Down
Larval Salivary gland70 44 of 4 0.53Down
Larval midgut39 74 of 4 0.29Down
Larval tubule43 14 of 4 0.30Down
Larval hindgut77 44 of 4 0.58Down
Larval fat body55 82 of 4 0.40Down
Larval trachea30 64 of 4 0.23Down
Larval carcass65 84 of 4 0.49Down
S2 cells (growing)45 44 of 4 0.34Down
Whole fly133 84 of 4

Looking for CG6238-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime